Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5601

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5600: 13968 - BLAST polysaccharide lyase family 14 protein [Sistotremastr..., at 479032 to 480783 13968 mRNA_5601: 13969 - K15014 SLC29A1_2_3, ENT1_2_3 solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3, at 481051 to 483053 13969 mRNA_5602: 13970 - HMMPfam-AAA-ATPase Vps4-associated protein 1-PF08432, at 483682 to 484493 13970

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
480,195 + 13968 mRNA_5600 0.66 -1.9
480,211 - 13968 mRNA_5600 0.67 -0.6
480,339 - 13968 mRNA_5600 0.75 -2.3
480,357 + 13968 mRNA_5600 0.76 1.4
480,522 + 13968 mRNA_5600 0.85 -2.3
480,649 - -1.3
480,659 + -1.1
480,791 + -2.3
481,805 - 13969 mRNA_5601 0.38 1.4
481,944 - 13969 mRNA_5601 0.45 -2.5
481,984 + 13969 mRNA_5601 0.47 -3.6
482,243 + 13969 mRNA_5601 0.60 -0.9
482,717 - 13969 mRNA_5601 0.83 -0.4
482,732 - 13969 mRNA_5601 0.84 -1.7
482,833 - 13969 mRNA_5601 0.89 -3.3
482,848 + 13969 mRNA_5601 0.90 -1.0
482,969 - -1.8
483,425 - -0.7
483,569 + -1.0