Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5600

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5599: 13967 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 475591 to 478385 13967 mRNA_5600: 13968 - BLAST polysaccharide lyase family 14 protein [Sistotremastr..., at 479032 to 480783 13968 mRNA_5601: 13969 - K15014 SLC29A1_2_3, ENT1_2_3 solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3, at 481051 to 483053 13969

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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478,137 - -2.7
478,453 - -2.9
478,491 - 0.1
478,718 + -0.2
478,867 - -1.9
478,874 - -1.9
479,518 + 13968 mRNA_5600 0.28 -1.3
479,736 - 13968 mRNA_5600 0.40 -2.9
479,744 + 13968 mRNA_5600 0.41 -1.5
479,765 + 13968 mRNA_5600 0.42 -0.2
479,790 + 13968 mRNA_5600 0.43 -0.3
479,885 + 13968 mRNA_5600 0.49 -2.0
480,032 - 13968 mRNA_5600 0.57 -0.5
480,195 + 13968 mRNA_5600 0.66 -1.9
480,211 - 13968 mRNA_5600 0.67 -0.6
480,339 - 13968 mRNA_5600 0.75 -2.3
480,357 + 13968 mRNA_5600 0.76 1.4
480,522 + 13968 mRNA_5600 0.85 -2.3
480,649 - -1.3
480,659 + -1.1
480,791 + -2.3