Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5592

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5591: 13959 - K11182 AOC1, ABP1 diamine oxidase, at 458129 to 461343 13959 mRNA_5592: 13960 - HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777, at 461599 to 463064 13960 mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463128 to 464888 13961

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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460,954 - 13959 mRNA_5591 0.88 0.5
461,214 - -1.2
461,232 - -0.8
461,497 + -0.8
461,497 + 1.7
461,562 - 0.6
461,686 - -0.1
461,697 - -1.5
461,953 - 13960 mRNA_5592 0.24 -4.6
462,286 - 13960 mRNA_5592 0.47 -1.2
462,330 + 13960 mRNA_5592 0.50 0.3
462,577 - 13960 mRNA_5592 0.67 -0.5
462,587 - 13960 mRNA_5592 0.67 -1.5
463,027 + 0.8
463,145 - -1.3
463,458 - 13961 mRNA_5593 0.19 -2.2
463,588 + 13961 mRNA_5593 0.26 -2.2
463,597 + 13961 mRNA_5593 0.27 -1.1
463,734 - 13961 mRNA_5593 0.34 -0.5
463,875 + 13961 mRNA_5593 0.42 -1.9
464,044 - 13961 mRNA_5593 0.52 -3.3
464,061 + 13961 mRNA_5593 0.53 -3.1