Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5587

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5586: 13954 - HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874, at 440845 to 442225 13954 mRNA_5587: 13955 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 442460 to 444934 13955 mRNA_5588: 13956 - K04646 CLTC clathrin heavy chain, at 445345 to 451026 13956

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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441,679 - 13954 mRNA_5586 0.60 -2.3
441,683 + 13954 mRNA_5586 0.61 -2.4
442,074 + 13954 mRNA_5586 0.89 -4.8
442,339 - -0.2
442,397 + -0.7
442,398 + -2.3
442,400 + -3.0
442,401 - 0.5
442,408 + -1.4
442,419 - -2.5
442,425 - 1.4
442,539 - -3.6
442,544 - -1.4
442,557 - 0.2
443,475 + 13955 mRNA_5587 0.41 0.0
443,595 + 13955 mRNA_5587 0.46 -0.4
443,862 - 13955 mRNA_5587 0.57 0.8
443,889 - 13955 mRNA_5587 0.58 0.2
444,296 - 13955 mRNA_5587 0.74 0.1
444,308 + 13955 mRNA_5587 0.75 -0.8
444,339 + 13955 mRNA_5587 0.76 -1.0
444,496 - 13955 mRNA_5587 0.82 -1.4
444,601 - 13955 mRNA_5587 0.87 -2.3
444,632 + 13955 mRNA_5587 0.88 -2.8
444,654 + 13955 mRNA_5587 0.89 -1.8
444,670 - 13955 mRNA_5587 0.89 -1.6
444,952 - -1.5
445,119 - -0.4
445,124 + -2.3
445,146 + -1.7
445,235 + -0.7
445,249 - -4.3
445,277 - 0.5
445,586 - 0.0