Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5577

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5576: 13944 - Interpro GDP-fucose protein O-fucosyltransferase, at 415685 to 417537 13944 mRNA_5577: 13945 - Hypothetical Protein, at 418154 to 419235 13945 mRNA_5578: 13946 - HMMPfam-HMG (high mobility group) box-PF00505,ProSiteProfiles-HMG boxes A and B DNA-binding domains profile.-PS50118,SMART-high mobility group-SM00398,SUPERFAMILY--SSF47095, at 419632 to 421061 13946

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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417,566 - -2.1
417,972 - -3.4
418,407 - 13945 mRNA_5577 0.23 -0.7
418,835 - 13945 mRNA_5577 0.63 -1.5
418,836 - 13945 mRNA_5577 0.63 -2.5
418,967 - 13945 mRNA_5577 0.75 -1.2
419,001 - 13945 mRNA_5577 0.78 0.2
419,140 - -1.1
419,140 - 0.0
419,258 - -1.2
419,273 + -2.5
419,404 - -1.0
419,415 + 0.5
419,416 + -0.5
419,420 - -0.3
419,435 + -2.7
419,437 + -2.0
419,449 - -0.6
419,519 - 0.1
419,542 - 0.5
419,542 - -2.8
419,548 - -1.9
419,549 + -2.9
419,550 + -2.7
419,555 - -1.5
419,558 + -0.1
419,558 + 0.1
419,559 - -1.5
419,561 + -1.3
419,565 + -2.2
419,568 + -0.5
419,568 + -3.0
419,570 - 0.6
419,571 - -4.1
419,572 - 0.1
419,572 + -0.3
419,575 - -3.1
419,581 + -0.7
419,588 + 0.3
419,590 + -0.5
419,590 - 0.4
419,591 + -0.8
419,595 + 0.3
419,596 + -2.9
419,605 + -0.0