Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5569

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5568: 13936 - Hypothetical Protein, at 396764 to 397075 13936 mRNA_5569: 13937 - BLAST pria protein [Moniliophthora roreri MCA 2997], at 397579 to 399010 13937 mRNA_5570: 13938 - K06067 HDAC1_2 histone deacetylase 1/2, at 399570 to 402274 13938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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396,619 - -1.2
396,781 + -0.9
396,782 + -0.7
396,927 - 13936 mRNA_5568 0.52 -1.0
397,169 - -1.8
397,209 + -2.2
397,220 - -0.8
397,324 - -1.1
397,343 - -1.2
397,346 + -1.3
397,347 + -3.1
397,371 - -0.8
397,465 + -2.7
397,480 - -1.9
397,487 + -1.7
397,496 + -2.3
397,507 - -2.9
397,508 - -0.4
397,510 + -2.0
397,514 - -1.5
397,514 - -2.0
397,524 - -1.7
397,526 - 0.1
397,531 - -2.4
397,533 - -0.5
397,533 - -0.6
397,654 + 0.2
397,659 - -2.3
397,661 - -1.9
397,667 - -0.9
397,669 + 1.6
397,670 + -1.5
397,734 + 13937 mRNA_5569 0.11 1.2
397,786 + 13937 mRNA_5569 0.14 -1.0
397,802 - 13937 mRNA_5569 0.16 -1.7
397,813 + 13937 mRNA_5569 0.16 -0.7
397,814 - 13937 mRNA_5569 0.16 -3.7
397,815 - 13937 mRNA_5569 0.16 -3.5
397,815 - 13937 mRNA_5569 0.16 -0.1
397,837 - 13937 mRNA_5569 0.18 -3.3
397,837 + 13937 mRNA_5569 0.18 0.3
397,855 - 13937 mRNA_5569 0.19 -0.1
397,882 - 13937 mRNA_5569 0.21 -3.0
397,979 + 13937 mRNA_5569 0.28 -2.2
398,260 - 13937 mRNA_5569 0.48 -2.4
398,269 + 13937 mRNA_5569 0.48 1.4
398,542 - 13937 mRNA_5569 0.67 -0.3
398,705 - 13937 mRNA_5569 0.79 0.3
398,859 - 13937 mRNA_5569 0.89 0.1
398,872 - -3.8
398,925 + -1.6
399,269 - 1.4
399,278 - -1.1
399,294 + -2.9
399,294 + 0.2
399,338 + -1.9
399,421 - -0.6
399,425 - -0.4
399,432 - 0.6
399,437 - -4.0
399,446 + -1.7
399,457 - 1.2
399,464 - -3.7