Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5562

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5561: 13929 - Hypothetical Protein, at 382634 to 383572 13929 mRNA_5562: 13930 - KOG0257 Kynurenine aminotransferase, glutamine transaminase K, at 383773 to 385239 13930 mRNA_5563: 13931 - K10756 RFC3_5 replication factor C subunit 3/5, at 385624 to 387371 13931

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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382,902 - 13929 mRNA_5561 0.29 -3.7
383,142 - 13929 mRNA_5561 0.54 -2.1
383,376 + 13929 mRNA_5561 0.79 -3.6
383,408 - 13929 mRNA_5561 0.82 0.3
383,538 + 0.1
383,568 - 1.4
383,579 + 0.5
383,626 - -1.0
383,642 - -2.3
383,694 + -0.6
383,993 + 13930 mRNA_5562 0.15 -1.8
384,002 - 13930 mRNA_5562 0.16 1.9
384,252 + 13930 mRNA_5562 0.33 -1.6
384,405 + 13930 mRNA_5562 0.43 -2.4
384,552 + 13930 mRNA_5562 0.53 -1.1
384,555 - 13930 mRNA_5562 0.53 -1.9
384,821 + 13930 mRNA_5562 0.71 -2.0
384,822 - 13930 mRNA_5562 0.72 -2.0
384,857 + 13930 mRNA_5562 0.74 -3.6
384,862 + 13930 mRNA_5562 0.74 1.6
384,866 + 13930 mRNA_5562 0.75 -2.9
385,009 - 13930 mRNA_5562 0.84 -3.6
385,020 + 13930 mRNA_5562 0.85 -1.5
385,124 - 0.8
385,154 + -1.2
385,164 - 0.1
385,278 - -1.9
385,298 + -1.0
385,304 - -1.1
385,304 + -2.7
385,314 + -1.7
385,464 - -1.7
385,470 - -1.4