Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5539

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5538: 13906 - Hypothetical Protein, at 327452 to 328556 13906 mRNA_5539: 13907 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 328856 to 330220 13907 mRNA_5540: 13908 - Interpro GDP-fucose protein O-fucosyltransferase, at 330944 to 333027 13908

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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327,904 - 13906 mRNA_5538 0.41 -0.7
327,938 - 13906 mRNA_5538 0.44 -2.5
327,961 + 13906 mRNA_5538 0.46 -1.5
327,963 - 13906 mRNA_5538 0.46 -1.1
328,079 - 13906 mRNA_5538 0.57 -0.5
328,079 - 13906 mRNA_5538 0.57 -1.7
328,138 - 13906 mRNA_5538 0.62 -1.2
328,245 + 13906 mRNA_5538 0.72 -2.5
328,251 + 13906 mRNA_5538 0.72 1.5
328,270 - 13906 mRNA_5538 0.74 -1.9
328,524 - -0.8
328,535 + -1.1
328,537 + -2.8
328,540 - -1.9
328,546 - -2.3
328,690 + 0.1
329,242 + 13907 mRNA_5539 0.28 -2.2
329,267 - 13907 mRNA_5539 0.30 -3.0
329,597 - 13907 mRNA_5539 0.54 -1.0
329,604 - 13907 mRNA_5539 0.55 -4.0
329,708 - 13907 mRNA_5539 0.62 -0.7
329,859 + 13907 mRNA_5539 0.73 -1.2
329,996 + 13907 mRNA_5539 0.84 -0.7
330,435 + -4.6
330,445 - -1.4
330,574 - -1.5
330,579 - -1.3
330,580 + -2.4
330,589 - 0.3
330,728 + 0.3
330,737 - 0.2
330,753 + -3.1
330,753 + -1.5
330,761 + -0.8
330,861 - -0.8
330,870 - -1.4
330,897 - -1.3
331,024 - -0.8