Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5525

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5524: 13892 - KOG3002 Zn finger protein, at 297072 to 298317 13892 mRNA_5525: 13893 - HMMPfam-Xyloglucan fucosyltransferase-PF03254, at 299170 to 301469 13893 mRNA_5526: 13894 - K00052 leuB 3-isopropylmalate dehydrogenase, at 301709 to 303276 13894

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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298,175 - 13892 mRNA_5524 0.89 1.3
298,317 + -0.7
298,500 + 0.8
298,517 + -0.7
298,646 + 0.6
298,934 + -1.2
299,046 - -2.6
299,058 - -0.4
299,061 + -0.8
299,071 + -1.7
299,071 + -2.0
299,071 + -3.2
299,074 + -2.5
299,120 - 1.3
299,128 - -0.8
299,257 - -2.0
299,264 - -1.4
299,278 - -0.0
299,414 - 13893 mRNA_5525 0.11 -0.9
299,462 + 13893 mRNA_5525 0.13 -1.5
299,518 - 13893 mRNA_5525 0.15 -0.5
299,525 + 13893 mRNA_5525 0.15 -3.6
299,577 - 13893 mRNA_5525 0.18 -2.1
299,579 + 13893 mRNA_5525 0.18 -1.4
299,587 + 13893 mRNA_5525 0.18 -0.6
299,730 + 13893 mRNA_5525 0.24 -0.5
299,873 - 13893 mRNA_5525 0.31 -3.3
300,005 - 13893 mRNA_5525 0.36 -1.5
300,008 + 13893 mRNA_5525 0.36 -1.2
300,141 - 13893 mRNA_5525 0.42 -3.7
300,277 + 13893 mRNA_5525 0.48 1.3
300,296 - 13893 mRNA_5525 0.49 0.3
300,296 - 13893 mRNA_5525 0.49 -1.0
300,301 - 13893 mRNA_5525 0.49 -1.1
300,427 + 13893 mRNA_5525 0.55 0.1
300,584 - 13893 mRNA_5525 0.61 -1.1
300,608 - 13893 mRNA_5525 0.63 -1.8
300,759 - 13893 mRNA_5525 0.69 -0.6
300,818 - 13893 mRNA_5525 0.72 -1.2
300,892 - 13893 mRNA_5525 0.75 0.2
300,929 - 13893 mRNA_5525 0.76 -0.6
300,943 + 13893 mRNA_5525 0.77 -1.2
301,041 - 13893 mRNA_5525 0.81 -0.3
301,058 + 13893 mRNA_5525 0.82 -0.9
301,064 - 13893 mRNA_5525 0.82 -2.2
301,161 + 13893 mRNA_5525 0.87 -1.8
301,474 - 0.5
301,774 + 1.7