Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5510

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264045 to 264907 13877 mRNA_5510: 13878 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 265643 to 266758 13878 mRNA_5511: 13879 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 267375 to 268513 13879

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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265,467 - -1.6
265,492 + 0.5
265,493 + 0.9
265,529 - -1.8
265,607 + -0.3
265,632 - -1.0
265,753 - -2.8
265,907 - 13878 mRNA_5510 0.24 -2.6
266,084 + 13878 mRNA_5510 0.40 -2.0
266,188 + 13878 mRNA_5510 0.49 -0.9
266,498 + 13878 mRNA_5510 0.77 -0.9
266,502 - 13878 mRNA_5510 0.77 0.4
267,189 + -1.9
267,503 - 13879 mRNA_5511 0.11 -0.5
267,521 + 13879 mRNA_5511 0.13 0.0
267,625 - 13879 mRNA_5511 0.22 -0.3
267,636 + 13879 mRNA_5511 0.23 0.2
267,683 - 13879 mRNA_5511 0.27 -1.8