Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5509

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5508: 13876 - KOG0297 TNF receptor-associated factor, at 262441 to 263588 13876 mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264045 to 264907 13877 mRNA_5510: 13878 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 265643 to 266758 13878

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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263,365 - 13876 mRNA_5508 0.80 -1.8
263,445 - 13876 mRNA_5508 0.87 -0.9
263,578 - -3.0
263,579 + -1.4
263,582 - -3.0
263,689 - -2.3
263,708 - -1.1
263,718 - -0.9
263,727 - -0.8
263,732 + -0.8
263,732 + -1.1
263,736 - -0.7
263,749 + -1.7
263,844 + -0.6
263,878 + -1.7
264,436 - 13877 mRNA_5509 0.45 -1.2
264,473 + 13877 mRNA_5509 0.50 1.6
264,623 - 13877 mRNA_5509 0.67 -2.3
265,467 - -1.6
265,492 + 0.5
265,493 + 0.9
265,529 - -1.8
265,607 + -0.3
265,632 - -1.0
265,753 - -2.8
265,907 - 13878 mRNA_5510 0.24 -2.6