Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5499

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5498: 13866 - Hypothetical Protein, at 238766 to 240187 13866 mRNA_5499: 13867 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 240567 to 242106 13867 mRNA_5500: 13868 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,ProSiteProfiles-MATH/TRAF domain profile.-PS50144,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 242489 to 245110 13868

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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239,671 - 13866 mRNA_5498 0.64 -4.1
239,783 - 13866 mRNA_5498 0.72 -2.3
239,816 + 13866 mRNA_5498 0.74 -0.2
240,374 - -0.3
240,553 + -1.7
240,773 + 13867 mRNA_5499 0.13 -1.9
241,007 - 13867 mRNA_5499 0.29 -0.8
241,108 + 13867 mRNA_5499 0.35 -2.1
241,355 - 13867 mRNA_5499 0.51 0.2
242,007 + -3.1
242,009 + -2.6
242,120 + -0.3
242,144 - -0.2
242,160 + -1.3
242,181 - 0.6
242,193 + -1.2
242,467 - -2.0
242,470 + -2.2
242,483 - -0.5
242,719 + -1.5
242,736 + -1.9
242,760 - 13868 mRNA_5500 0.10 -1.6
242,800 - 13868 mRNA_5500 0.12 -3.0
242,899 - 13868 mRNA_5500 0.16 -0.4
243,050 + 13868 mRNA_5500 0.21 -3.5