Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5498

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5498: 13866 - Hypothetical Protein, at 238766 to 240187 13866 mRNA_5499: 13867 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 240567 to 242106 13867

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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237,900 - -1.7
237,925 + -3.5
237,928 + -2.8
238,042 - -2.7
238,073 + -2.9
238,082 - -1.3
238,086 + -0.6
238,097 + 1.3
238,097 + -0.8
238,098 + -2.5
238,191 + 0.4
238,196 - -2.6
238,210 - -1.6
238,212 + -0.6
238,234 + -3.0
238,287 - -1.6
238,319 + -0.9
238,336 + -3.3
238,353 + -0.9
238,359 - -2.0
238,359 + -2.8
238,360 - -2.6
238,396 - -1.4
238,408 - -2.1
238,415 - -0.9
238,416 + -3.2
238,420 + -1.0
238,422 - -3.8
238,446 + -2.4
238,473 + -0.0
238,479 - -0.7
238,484 + -0.7
238,485 - -1.5
238,487 + -2.0
238,507 - -1.4
238,508 + -3.1
238,613 + -0.5
238,619 + -0.8
238,626 + -1.4
238,629 - -1.3
238,633 + 0.6
238,636 + -0.4
238,637 + -1.9
238,639 + -1.1
238,650 - -1.4
238,653 + -1.7
238,656 - -1.5
238,681 + -1.2
238,717 + -0.9
238,732 - -0.8
238,732 + 2.8
238,751 - 0.6
238,758 - -1.6
238,762 - -4.2
238,767 + 2.0
238,770 - -0.0
238,775 - -2.0
238,883 - -1.3
238,893 - -2.5
238,897 - 1.4
238,901 - 0.2
238,904 + -2.2
238,906 + -2.8
238,925 - 13866 mRNA_5498 0.11 0.6
238,934 + 13866 mRNA_5498 0.12 -0.4
238,938 - 13866 mRNA_5498 0.12 -0.8
238,968 - 13866 mRNA_5498 0.14 -1.4
238,970 - 13866 mRNA_5498 0.14 -0.3
238,983 + 13866 mRNA_5498 0.15 -1.5
238,986 + 13866 mRNA_5498 0.15 -2.5
238,999 - 13866 mRNA_5498 0.16 -1.6
239,004 + 13866 mRNA_5498 0.17 -1.0
239,041 - 13866 mRNA_5498 0.19 -1.1
239,043 + 13866 mRNA_5498 0.19 -2.2
239,064 + 13866 mRNA_5498 0.21 -3.0
239,091 + 13866 mRNA_5498 0.23 -1.1
239,100 + 13866 mRNA_5498 0.23 -1.8
239,111 - 13866 mRNA_5498 0.24 -0.8
239,117 - 13866 mRNA_5498 0.25 -2.1
239,146 - 13866 mRNA_5498 0.27 -0.9
239,167 + 13866 mRNA_5498 0.28 -1.3
239,180 - 13866 mRNA_5498 0.29 -0.7
239,187 + 13866 mRNA_5498 0.30 1.4
239,193 - 13866 mRNA_5498 0.30 -1.5
239,193 - 13866 mRNA_5498 0.30 1.5
239,196 + 13866 mRNA_5498 0.30 -1.7
239,221 - 13866 mRNA_5498 0.32 0.4
239,232 - 13866 mRNA_5498 0.33 -1.6
239,237 - 13866 mRNA_5498 0.33 -1.5
239,243 - 13866 mRNA_5498 0.34 -3.0
239,255 - 13866 mRNA_5498 0.34 -3.0
239,272 + 13866 mRNA_5498 0.36 0.7
239,275 + 13866 mRNA_5498 0.36 -0.6
239,382 + 13866 mRNA_5498 0.43 -2.0
239,481 + 13866 mRNA_5498 0.50 -0.9
239,524 - 13866 mRNA_5498 0.53 0.3
239,671 - 13866 mRNA_5498 0.64 -4.1
239,783 - 13866 mRNA_5498 0.72 -2.3
239,816 + 13866 mRNA_5498 0.74 -0.2
240,374 - -0.3
240,553 + -1.7
240,773 + 13867 mRNA_5499 0.13 -1.9
241,007 - 13867 mRNA_5499 0.29 -0.8
241,108 + 13867 mRNA_5499 0.35 -2.1