Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5489

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5488: 13856 - K01078 E3.1.3.2 acid phosphatase, at 214884 to 216932 13856 mRNA_5489: 13857 - KOG1263 Multicopper oxidases, at 217387 to 219494 13857 mRNA_5490: 13858 - Hypothetical Protein, at 219614 to 220900 13858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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216,564 - 13856 mRNA_5488 0.82 -0.3
216,982 - -2.8
216,997 - -0.6
217,002 + -1.0
217,147 + -2.4
217,150 + -0.7
217,152 - -2.2
217,275 - -2.0
217,298 + -1.4
217,300 + -0.1
217,317 - -0.9
217,613 - 13857 mRNA_5489 0.11 -0.3
217,651 + 13857 mRNA_5489 0.13 -2.3
217,672 - 13857 mRNA_5489 0.14 -0.7
217,769 + 13857 mRNA_5489 0.18 1.4
217,922 - 13857 mRNA_5489 0.25 -1.2
217,923 + 13857 mRNA_5489 0.25 3.2
218,092 - 13857 mRNA_5489 0.33 -2.6
218,300 - 13857 mRNA_5489 0.43 -1.2
218,730 - 13857 mRNA_5489 0.64 -0.5
218,770 + 13857 mRNA_5489 0.66 -3.6
219,190 + 13857 mRNA_5489 0.86 0.4
219,208 + 13857 mRNA_5489 0.86 -0.2
219,534 - -0.1
219,652 - -1.1
219,704 - -1.9
219,883 + 13858 mRNA_5490 0.21 -1.7
220,139 + 13858 mRNA_5490 0.41 -0.8
220,274 + 13858 mRNA_5490 0.51 -2.9
220,298 + 13858 mRNA_5490 0.53 -2.1
220,301 - 13858 mRNA_5490 0.53 -1.0
220,408 - 13858 mRNA_5490 0.62 -0.4