Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5488

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213824 to 214622 13855 mRNA_5488: 13856 - K01078 E3.1.3.2 acid phosphatase, at 214884 to 216932 13856 mRNA_5489: 13857 - KOG1263 Multicopper oxidases, at 217387 to 219494 13857

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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214,062 - 13855 mRNA_5487 0.30 -0.3
214,102 + 13855 mRNA_5487 0.35 -1.8
214,135 + 13855 mRNA_5487 0.39 -1.5
214,201 + 13855 mRNA_5487 0.47 -3.1
214,516 - 13855 mRNA_5487 0.87 -2.9
214,836 - -0.1
214,939 + -0.5
215,062 + 0.6
215,284 + 13856 mRNA_5488 0.20 -1.9
215,408 - 13856 mRNA_5488 0.26 -1.0
215,534 + 13856 mRNA_5488 0.32 1.4
215,537 - 13856 mRNA_5488 0.32 -1.8
215,995 + 13856 mRNA_5488 0.54 -2.9
216,137 + 13856 mRNA_5488 0.61 -1.0
216,564 - 13856 mRNA_5488 0.82 -0.3
216,982 - -2.8
216,997 - -0.6
217,002 + -1.0
217,147 + -2.4
217,150 + -0.7
217,152 - -2.2
217,275 - -2.0
217,298 + -1.4
217,300 + -0.1
217,317 - -0.9
217,613 - 13857 mRNA_5489 0.11 -0.3
217,651 + 13857 mRNA_5489 0.13 -2.3
217,672 - 13857 mRNA_5489 0.14 -0.7
217,769 + 13857 mRNA_5489 0.18 1.4
217,922 - 13857 mRNA_5489 0.25 -1.2
217,923 + 13857 mRNA_5489 0.25 3.2