Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5487

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5486: 13854 - K15695 RNF103, KF1 E3 ubiquitin-protein ligase RNF103, at 211057 to 213286 13854 mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213824 to 214622 13855 mRNA_5488: 13856 - K01078 E3.1.3.2 acid phosphatase, at 214884 to 216932 13856

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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213,057 + 13854 mRNA_5486 0.90 1.8
213,510 - -0.9
213,641 + -2.4
213,658 - -0.9
214,062 - 13855 mRNA_5487 0.30 -0.3
214,102 + 13855 mRNA_5487 0.35 -1.8
214,135 + 13855 mRNA_5487 0.39 -1.5
214,201 + 13855 mRNA_5487 0.47 -3.1
214,516 - 13855 mRNA_5487 0.87 -2.9
214,836 - -0.1
214,939 + -0.5
215,062 + 0.6
215,284 + 13856 mRNA_5488 0.20 -1.9
215,408 - 13856 mRNA_5488 0.26 -1.0
215,534 + 13856 mRNA_5488 0.32 1.4
215,537 - 13856 mRNA_5488 0.32 -1.8