Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5483

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5482: 13850 - Hypothetical Protein, at 201045 to 202061 13850 mRNA_5483: 13851 - KOG1339 Aspartyl protease, at 202681 to 205111 13851 mRNA_5484: 13852 - K16612 HOOK1 protein HOOK1, at 205499 to 209113 13852

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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201,716 - 13850 mRNA_5482 0.66 -0.1
201,728 + 13850 mRNA_5482 0.67 -2.3
201,858 - 13850 mRNA_5482 0.80 -1.3
202,025 + -2.4
202,128 - -3.4
202,269 - -3.1
202,281 + -1.2
202,292 - 0.2
202,408 - -3.1
202,410 + 0.8
202,411 + -3.4
202,413 + -3.1
202,424 + -1.7
202,431 + -3.5
202,585 + -2.5
202,601 - -2.0
202,729 - -0.1
202,739 + -2.5
202,742 - -3.1
202,885 - -0.3
202,903 - -2.9
203,044 - 13851 mRNA_5483 0.15 0.5
203,057 + 13851 mRNA_5483 0.15 -1.2
203,332 - 13851 mRNA_5483 0.27 0.6
203,930 - 13851 mRNA_5483 0.51 0.2
204,512 + 13851 mRNA_5483 0.75 -1.5
204,990 - 0.4
205,089 - -1.5
205,231 - 0.5
205,249 + 0.4
205,519 + -0.3
205,563 - -2.6
205,572 + -0.3
205,677 - 0.5
205,725 - 0.3
205,779 - 0.7
205,821 - 0.8
205,874 - 13852 mRNA_5484 0.10 0.3
205,878 + 13852 mRNA_5484 0.10 -2.4
205,878 + 13852 mRNA_5484 0.10 -1.0
205,878 + 13852 mRNA_5484 0.10 -2.3
205,952 + 13852 mRNA_5484 0.13 -1.3
206,103 - 13852 mRNA_5484 0.17 -1.1