Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5476

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5475: 13843 - KOG0084 GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins, at 181752 to 183361 13843 mRNA_5476: 13844 - KOG4719 Nuclear pore complex protein, at 183800 to 188314 13844 mRNA_5477: 13845 - K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11, at 188584 to 192714 13845

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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182,802 - 13843 mRNA_5475 0.65 -1.0
182,830 - 13843 mRNA_5475 0.67 0.3
182,995 + 13843 mRNA_5475 0.77 -0.0
183,144 - 13843 mRNA_5475 0.86 -1.9
183,252 - -1.8
183,391 + 0.5
183,405 - -1.8
183,427 - -1.1
183,565 - -0.7
184,182 + -1.5
184,182 + -1.3
184,300 + 13844 mRNA_5476 0.11 -1.6
184,480 + 13844 mRNA_5476 0.15 -2.3
184,578 - 13844 mRNA_5476 0.17 -1.0
184,578 - 13844 mRNA_5476 0.17 -2.6
186,691 - 13844 mRNA_5476 0.64 0.6
187,006 + 13844 mRNA_5476 0.71 -1.2
188,366 + -1.7
188,373 + -2.7
188,390 - -0.6
188,512 - -3.1
188,521 + -0.3
188,794 - 0.8