Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5475

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5474: 13842 - HMMPfam-Mitochondrial ATP synthase epsilon chain-PF04627,SUPERFAMILY--SSF48690, at 180960 to 181593 13842 mRNA_5475: 13843 - KOG0084 GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins, at 181752 to 183361 13843 mRNA_5476: 13844 - KOG4719 Nuclear pore complex protein, at 183800 to 188314 13844

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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180,907 + -2.0
180,907 + -1.2
180,910 - -0.2
180,911 + -2.7
180,911 + -2.9
180,914 - 1.9
180,914 - 0.5
180,921 + -1.9
181,754 + -1.3
181,758 + -1.2
181,824 + -0.3
181,912 + -1.6
181,941 - 13843 mRNA_5475 0.12 -0.5
181,949 - 13843 mRNA_5475 0.12 -1.5
181,950 + 13843 mRNA_5475 0.12 -0.3
182,096 + 13843 mRNA_5475 0.21 2.7
182,107 + 13843 mRNA_5475 0.22 0.3
182,247 + 13843 mRNA_5475 0.31 -0.1
182,252 - 13843 mRNA_5475 0.31 -0.6
182,419 + 13843 mRNA_5475 0.41 -4.4
182,567 - 13843 mRNA_5475 0.51 -0.3
182,802 - 13843 mRNA_5475 0.65 -1.0
182,830 - 13843 mRNA_5475 0.67 0.3
182,995 + 13843 mRNA_5475 0.77 -0.0
183,144 - 13843 mRNA_5475 0.86 -1.9
183,252 - -1.8
183,391 + 0.5
183,405 - -1.8
183,427 - -1.1
183,565 - -0.7
184,182 + -1.5
184,182 + -1.3
184,300 + 13844 mRNA_5476 0.11 -1.6