Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5463

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5462: 13830 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 148438 to 149863 13830 mRNA_5463: 13831 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 150414 to 154047 13831 mRNA_5464: 13832 - K09579 PIN4 peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, at 155001 to 155781 13832

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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149,447 + 13830 mRNA_5462 0.71 0.5
149,450 - 13830 mRNA_5462 0.71 0.4
149,498 - 13830 mRNA_5462 0.74 -0.5
149,572 + 13830 mRNA_5462 0.80 -1.4
149,680 + 13830 mRNA_5462 0.87 -0.9
149,932 + -0.8
150,239 - -2.5
150,328 + -2.7
150,393 - -0.5
150,536 + -1.2
150,671 + 0.5
151,138 + 13831 mRNA_5463 0.20 -0.4
151,315 - 13831 mRNA_5463 0.25 -1.9
151,548 - 13831 mRNA_5463 0.31 -0.8
151,602 - 13831 mRNA_5463 0.33 -1.1
151,650 + 13831 mRNA_5463 0.34 -0.5
152,149 + 13831 mRNA_5463 0.48 -1.6
152,311 + 13831 mRNA_5463 0.52 -0.7
152,320 - 13831 mRNA_5463 0.52 -1.3
152,599 + 13831 mRNA_5463 0.60 0.2
152,644 + 13831 mRNA_5463 0.61 -3.4
152,684 - 13831 mRNA_5463 0.62 -2.0
152,899 - 13831 mRNA_5463 0.68 0.2
152,995 + 13831 mRNA_5463 0.71 -2.1
153,020 - 13831 mRNA_5463 0.72 -0.9
153,645 + 13831 mRNA_5463 0.89 -1.0
153,668 + 13831 mRNA_5463 0.90 0.2
153,774 - -0.5
153,813 - -3.1
153,820 - -1.3
153,921 - -0.6
153,924 - 0.0
153,932 - -1.7
153,934 - -1.1
153,939 - -1.6
153,940 - -1.5
153,944 + 0.2
153,946 + -0.7
153,949 + -2.6
153,949 - 1.2
153,957 + -0.1
153,958 - -1.7
153,959 + -0.4
153,961 + -0.4
153,961 - -1.6
153,963 + -1.0
153,964 - -0.8
153,967 + -1.8
153,967 + 0.1
153,968 + -0.1
153,970 - -0.4
153,981 + 0.4
154,101 - -2.7
154,110 + -1.6
154,110 + -1.1
154,116 + 1.2
154,129 - -1.7
154,130 - 0.5
154,131 + -2.2
154,132 - -2.8
154,133 - -0.1
154,143 + -1.5
154,153 - -4.3
154,156 + -1.7
154,157 + -3.6
154,170 + -2.8
154,204 + -2.7
154,204 - -1.6
154,204 + -3.3
154,250 + -0.3
154,267 - -0.4
154,284 + -3.0
154,285 - -0.4
154,301 - -1.5
154,301 - -2.2
154,310 - -0.5
154,316 - -1.5
154,320 - -1.9
154,320 - -2.0
154,321 + -0.0
154,324 + -1.2
154,327 - -3.2
154,330 - -3.5
154,332 + -1.8
154,337 - -3.5
154,350 + -1.9
154,437 + 0.8
154,450 + -0.0
154,455 - -1.2
154,460 + -1.8
154,473 - -2.2
154,491 + -1.8
154,495 - -2.5
154,546 + 1.2
154,552 + -2.0
154,564 + -0.2
154,579 + -0.1
154,581 + -2.2
154,592 - -0.9
154,599 - -1.5
154,681 - -1.0
154,685 + -0.8
154,710 - -1.5
154,723 + -2.1
154,738 + -0.7
154,753 - -1.7
154,764 - 0.9
154,764 - -0.5
154,771 + -3.4
154,773 - -1.9
154,814 + -1.7
154,930 - -0.9