Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5460

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5459: 13827 - K11274 WDHD1, CTF4 chromosome transmission fidelity protein 4, at 137712 to 142307 13827 mRNA_5460: 13828 - Hypothetical Protein, at 142761 to 144304 13828 mRNA_5461: 13829 - KOG1721 FOG Zn-finger, at 144867 to 148106 13829

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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142,477 + -1.0
142,482 + -0.8
142,486 + -1.1
142,658 + -0.5
142,678 + -1.2
142,801 + -2.5
143,078 + 13828 mRNA_5460 0.21 -1.0
143,528 + 13828 mRNA_5460 0.50 -1.4
143,807 - 13828 mRNA_5460 0.68 -1.1
143,902 - 13828 mRNA_5460 0.74 -0.9
144,828 - -1.3
144,832 - -0.2
144,939 + -2.1
145,112 - -1.4
145,132 - -2.5
145,133 + -3.0
145,301 - 13829 mRNA_5461 0.13 -0.8