Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5428

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5427: 13795 - Hypothetical Protein, at 75255 to 76663 13795 mRNA_5428: 13796 - KOG0157 Cytochrome P450 CYP4/CYP19/CYP26 subfamilies, at 77473 to 79440 13796 mRNA_5429: 13797 - K01067 E3.1.2.1, ACH1 acetyl-CoA hydrolase, at 79557 to 82396 13797

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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76,578 - -1.2
76,596 + -1.5
76,811 + -1.5
76,868 + -1.3
77,130 + -0.8
77,150 + -1.7
77,154 + -2.4
77,162 + -1.7
77,299 - -2.3
77,313 + -0.8
77,316 - -1.7
77,321 - -1.5
77,343 + -0.5
77,454 - -0.1
77,483 + -3.1
77,512 + -0.9
77,776 - 13796 mRNA_5428 0.15 1.0
77,784 + 13796 mRNA_5428 0.16 -0.9
78,065 - 13796 mRNA_5428 0.30 -1.9
78,066 + 13796 mRNA_5428 0.30 -0.6
78,291 - 13796 mRNA_5428 0.42 -0.1
78,300 - 13796 mRNA_5428 0.42 0.2
78,491 - 13796 mRNA_5428 0.52 -0.4
78,502 - 13796 mRNA_5428 0.52 -2.1
78,563 - 13796 mRNA_5428 0.55 -1.6
78,602 + 13796 mRNA_5428 0.57 -1.2
78,907 - 13796 mRNA_5428 0.73 -1.5
79,226 + 13796 mRNA_5428 0.89 -0.2
79,295 - -1.2
79,319 - -2.7
79,492 + -2.1
79,780 - -1.8
79,781 + 1.3
79,869 + 13797 mRNA_5429 0.11 -1.2
79,869 + 13797 mRNA_5429 0.11 -1.1
79,877 - 13797 mRNA_5429 0.11 -1.0
79,889 + 13797 mRNA_5429 0.12 -1.4
79,920 + 13797 mRNA_5429 0.13 0.4
79,975 + 13797 mRNA_5429 0.15 -2.1
80,070 + 13797 mRNA_5429 0.18 -1.5
80,275 - 13797 mRNA_5429 0.25 0.2