Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5421

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5420: 13788 - Hypothetical Protein, at 60457 to 62427 13788 mRNA_5421: 13789 - Interpro Domain of unknown function (DUF5102) 0, at 62877 to 64571 13789 mRNA_5422: 13790 - HMMPfam-Domain of unknown function (DUF336)-PF03928,SUPERFAMILY--SSF143744, at 64822 to 65544 13790

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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62,065 - 13788 mRNA_5420 0.82 -0.6
62,073 + 13788 mRNA_5420 0.82 2.0
62,219 - 13788 mRNA_5420 0.89 -1.2
62,219 - 13788 mRNA_5420 0.89 0.6
62,220 + 13788 mRNA_5420 0.89 0.8
62,377 - -1.7
62,610 - -1.2
62,613 + -0.9
62,710 - 0.3
62,743 - 0.6
62,750 - -2.4
62,752 + -0.2
62,753 - -1.8
62,759 - 1.2
62,765 - 0.6
62,769 + -0.4
62,773 - -3.6
62,774 + 0.6
62,780 + -1.1
62,882 + -1.5
63,037 - -2.2
64,122 - 13789 mRNA_5421 0.73 -0.4
64,195 - 13789 mRNA_5421 0.78 -0.7
64,476 + -2.7
64,484 + -3.0
64,500 + -1.2
64,503 - 1.0
64,521 + -2.6
64,619 + -1.8
64,621 - -3.4
64,623 - -3.4
64,624 + -0.8
64,655 - -2.0
64,655 - -1.4
64,730 + -2.0
64,772 + -0.9
64,799 + -1.8
64,822 - 0.4
64,895 - 13790 mRNA_5422 0.10 -0.5
64,929 - 13790 mRNA_5422 0.15 -1.4
64,930 + 13790 mRNA_5422 0.15 -2.5
64,961 - 13790 mRNA_5422 0.19 -1.1
64,961 - 13790 mRNA_5422 0.19 -3.5
65,030 + 13790 mRNA_5422 0.29 -0.1
65,070 - 13790 mRNA_5422 0.34 1.1
65,076 + 13790 mRNA_5422 0.35 -3.4
65,089 - 13790 mRNA_5422 0.37 -0.3
65,102 + 13790 mRNA_5422 0.39 -0.5
65,200 - 13790 mRNA_5422 0.52 0.0
65,252 + 13790 mRNA_5422 0.59 -2.6
65,373 - 13790 mRNA_5422 0.76 -0.6
65,474 - -2.2
65,494 - -2.1
65,498 - 0.1
65,501 + -0.2