Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5420

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58738 to 60106 13787 mRNA_5420: 13788 - Hypothetical Protein, at 60457 to 62427 13788 mRNA_5421: 13789 - Interpro Domain of unknown function (DUF5102) 0, at 62877 to 64571 13789

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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59,511 + 13787 mRNA_5419 0.56 -1.3
59,516 - 13787 mRNA_5419 0.57 -3.3
59,547 - 13787 mRNA_5419 0.59 -2.2
59,547 - 13787 mRNA_5419 0.59 -0.5
59,554 + 13787 mRNA_5419 0.60 1.1
59,664 - 13787 mRNA_5419 0.68 -1.7
59,749 - 13787 mRNA_5419 0.74 -0.9
59,831 + 13787 mRNA_5419 0.80 -1.7
59,849 - 13787 mRNA_5419 0.81 -0.5
59,870 - 13787 mRNA_5419 0.83 -2.6
60,011 + -2.1
60,012 + -1.1
60,012 + -1.4
60,019 + -1.6
60,116 - -0.2
60,260 + 0.3
60,289 + -0.8
60,292 - -1.9
60,306 - -0.5
60,320 + -0.2
60,596 + -2.8
60,598 - -2.5
60,688 + 13788 mRNA_5420 0.12 -0.4
60,786 - 13788 mRNA_5420 0.17 -3.3
60,788 + 13788 mRNA_5420 0.17 -2.5
60,861 - 13788 mRNA_5420 0.20 0.5
60,882 - 13788 mRNA_5420 0.22 -1.1
60,988 - 13788 mRNA_5420 0.27 -3.5
61,048 - 13788 mRNA_5420 0.30 -1.2
61,086 + 13788 mRNA_5420 0.32 0.0
61,169 - 13788 mRNA_5420 0.36 -1.8
61,321 - 13788 mRNA_5420 0.44 -1.4
61,470 - 13788 mRNA_5420 0.51 -4.0
61,511 - 13788 mRNA_5420 0.53 -0.6
61,521 + 13788 mRNA_5420 0.54 -1.5
61,653 + 13788 mRNA_5420 0.61 -3.0
61,706 + 13788 mRNA_5420 0.63 -3.9
61,706 + 13788 mRNA_5420 0.63 -0.2
61,738 + 13788 mRNA_5420 0.65 -2.1
62,065 - 13788 mRNA_5420 0.82 -0.6
62,073 + 13788 mRNA_5420 0.82 2.0
62,219 - 13788 mRNA_5420 0.89 -1.2
62,219 - 13788 mRNA_5420 0.89 0.6
62,220 + 13788 mRNA_5420 0.89 0.8
62,377 - -1.7
62,610 - -1.2
62,613 + -0.9
62,710 - 0.3
62,743 - 0.6
62,750 - -2.4
62,752 + -0.2
62,753 - -1.8
62,759 - 1.2
62,765 - 0.6
62,769 + -0.4
62,773 - -3.6
62,774 + 0.6
62,780 + -1.1
62,882 + -1.5
63,037 - -2.2