Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5419

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56919 to 58432 13786 mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58738 to 60106 13787 mRNA_5420: 13788 - Hypothetical Protein, at 60457 to 62427 13788

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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57,776 + 13786 mRNA_5418 0.57 -1.9
57,778 - 13786 mRNA_5418 0.57 0.1
57,948 - 13786 mRNA_5418 0.68 -1.2
58,060 - 13786 mRNA_5418 0.75 -2.4
58,079 - 13786 mRNA_5418 0.77 -2.4
58,138 - 13786 mRNA_5418 0.81 -0.4
58,166 - 13786 mRNA_5418 0.82 -2.0
58,212 - 13786 mRNA_5418 0.85 -2.9
58,214 + 13786 mRNA_5418 0.86 -2.2
58,395 + -1.4
58,519 - -3.0
58,682 + -1.5
58,816 + -1.0
59,111 + 13787 mRNA_5419 0.27 -1.0
59,124 + 13787 mRNA_5419 0.28 -2.3
59,195 - 13787 mRNA_5419 0.33 0.2
59,258 - 13787 mRNA_5419 0.38 -2.6
59,418 + 13787 mRNA_5419 0.50 -2.4
59,424 + 13787 mRNA_5419 0.50 -1.7
59,456 + 13787 mRNA_5419 0.52 -1.1
59,511 + 13787 mRNA_5419 0.56 -1.3
59,516 - 13787 mRNA_5419 0.57 -3.3
59,547 - 13787 mRNA_5419 0.59 -2.2
59,547 - 13787 mRNA_5419 0.59 -0.5
59,554 + 13787 mRNA_5419 0.60 1.1
59,664 - 13787 mRNA_5419 0.68 -1.7
59,749 - 13787 mRNA_5419 0.74 -0.9
59,831 + 13787 mRNA_5419 0.80 -1.7
59,849 - 13787 mRNA_5419 0.81 -0.5
59,870 - 13787 mRNA_5419 0.83 -2.6
60,011 + -2.1
60,012 + -1.1
60,012 + -1.4
60,019 + -1.6
60,116 - -0.2
60,260 + 0.3
60,289 + -0.8
60,292 - -1.9
60,306 - -0.5
60,320 + -0.2
60,596 + -2.8
60,598 - -2.5
60,688 + 13788 mRNA_5420 0.12 -0.4
60,786 - 13788 mRNA_5420 0.17 -3.3
60,788 + 13788 mRNA_5420 0.17 -2.5
60,861 - 13788 mRNA_5420 0.20 0.5
60,882 - 13788 mRNA_5420 0.22 -1.1
60,988 - 13788 mRNA_5420 0.27 -3.5
61,048 - 13788 mRNA_5420 0.30 -1.2
61,086 + 13788 mRNA_5420 0.32 0.0