Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5417

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5416: 13784 - K04496 CTBP C-terminal binding protein, at 52502 to 53852 13784 mRNA_5417: 13785 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 53998 to 56725 13785 mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56919 to 58432 13786

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
53,002 + 13784 mRNA_5416 0.37 -0.9
53,163 + 13784 mRNA_5416 0.49 0.3
53,273 + 13784 mRNA_5416 0.57 -0.1
53,347 - 13784 mRNA_5416 0.63 0.8
53,383 - 13784 mRNA_5416 0.65 -0.2
53,512 - 13784 mRNA_5416 0.75 0.9
53,551 + 13784 mRNA_5416 0.78 -0.6
53,605 - 13784 mRNA_5416 0.82 -1.2
53,733 - -0.3
54,389 - 13785 mRNA_5417 0.14 0.5
54,442 - 13785 mRNA_5417 0.16 -0.5
54,545 - 13785 mRNA_5417 0.20 0.7
54,748 + 13785 mRNA_5417 0.27 -1.0
54,750 + 13785 mRNA_5417 0.28 -1.5
54,756 - 13785 mRNA_5417 0.28 -3.3
54,792 - 13785 mRNA_5417 0.29 -2.1
54,871 + 13785 mRNA_5417 0.32 -0.0
55,060 - 13785 mRNA_5417 0.39 -2.6
55,075 - 13785 mRNA_5417 0.39 -1.1
55,076 - 13785 mRNA_5417 0.40 0.1
55,202 - 13785 mRNA_5417 0.44 -0.6
55,226 + 13785 mRNA_5417 0.45 -1.9
55,347 + 13785 mRNA_5417 0.49 0.3
55,489 + 13785 mRNA_5417 0.55 -0.4
55,495 - 13785 mRNA_5417 0.55 -0.4
55,737 + 13785 mRNA_5417 0.64 -1.6
55,739 - 13785 mRNA_5417 0.64 -1.1
56,079 + 13785 mRNA_5417 0.76 0.0
56,363 + 13785 mRNA_5417 0.87 -2.4
56,368 + 13785 mRNA_5417 0.87 -0.3
56,398 - 13785 mRNA_5417 0.88 -1.5
56,647 + -1.4
56,668 - -2.1
56,684 - 0.1
56,782 - 0.0
56,804 - -2.7
56,813 - -1.2
56,828 - -2.0
56,837 - -1.0
56,852 - -0.3
56,856 + -1.2
56,971 + -1.6
57,071 - 13786 mRNA_5418 0.10 0.4
57,095 - 13786 mRNA_5418 0.12 -1.8
57,114 + 13786 mRNA_5418 0.13 -1.1
57,271 + 13786 mRNA_5418 0.23 -1.7
57,380 - 13786 mRNA_5418 0.30 0.2
57,513 + 13786 mRNA_5418 0.39 -0.3
57,518 - 13786 mRNA_5418 0.40 -0.1
57,518 - 13786 mRNA_5418 0.40 -1.0
57,531 + 13786 mRNA_5418 0.40 -2.3
57,531 + 13786 mRNA_5418 0.40 -1.9
57,670 - 13786 mRNA_5418 0.50 -3.2
57,684 - 13786 mRNA_5418 0.51 -0.7
57,702 + 13786 mRNA_5418 0.52 -2.3