Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5414

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5413: 13781 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 43823 to 46039 13781 mRNA_5414: 13782 - HMMPfam-Glycosyl transferase family 2-PF13704, at 46162 to 47875 13782

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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45,176 - 13781 mRNA_5413 0.61 -1.7
45,275 + 13781 mRNA_5413 0.65 -3.6
45,595 + 13781 mRNA_5413 0.80 -0.7
45,623 - 13781 mRNA_5413 0.81 -1.3
45,669 - 13781 mRNA_5413 0.83 -2.3
45,678 - 13781 mRNA_5413 0.84 -0.2
45,678 - 13781 mRNA_5413 0.84 -1.5
45,684 + 13781 mRNA_5413 0.84 0.2
45,706 + 13781 mRNA_5413 0.85 0.2
45,709 + 13781 mRNA_5413 0.85 -0.8
45,715 - 13781 mRNA_5413 0.85 -1.6
45,999 + -2.5
46,007 - -0.2
46,120 - 0.8
46,124 - -2.1
46,132 - -4.0
46,154 - -1.3
46,156 - -2.3
46,446 - 13782 mRNA_5414 0.17 -0.6
46,447 + 13782 mRNA_5414 0.17 -2.6
46,448 - 13782 mRNA_5414 0.17 -1.5
46,540 - 13782 mRNA_5414 0.22 -2.0
46,629 + 13782 mRNA_5414 0.27 -4.3
46,671 + 13782 mRNA_5414 0.30 0.9
46,746 - 13782 mRNA_5414 0.34 1.4
47,024 + 13782 mRNA_5414 0.50 -2.7
47,065 + 13782 mRNA_5414 0.53 -0.7
47,072 + 13782 mRNA_5414 0.53 -0.8
47,076 + 13782 mRNA_5414 0.53 -2.5
47,078 + 13782 mRNA_5414 0.53 -1.2
47,182 - 13782 mRNA_5414 0.60 0.5
47,323 - 13782 mRNA_5414 0.68 -0.7
47,335 - 13782 mRNA_5414 0.68 -2.1
47,340 - 13782 mRNA_5414 0.69 0.2
47,607 - 13782 mRNA_5414 0.84 -0.6
47,618 + 13782 mRNA_5414 0.85 -2.1
47,628 + 13782 mRNA_5414 0.86 0.4
47,635 + 13782 mRNA_5414 0.86 -2.6
47,639 - 13782 mRNA_5414 0.86 -1.3
47,729 - -1.4
47,759 + -0.3
48,073 + -2.7
48,165 - -1.1
48,654 - 0.5
48,833 - -0.4