Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5413

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5412: 13780 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 41309 to 43272 13780 mRNA_5413: 13781 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 43823 to 46039 13781 mRNA_5414: 13782 - HMMPfam-Glycosyl transferase family 2-PF13704, at 46162 to 47875 13782

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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42,928 - 13780 mRNA_5412 0.82 1.4
42,929 + 13780 mRNA_5412 0.82 -0.8
43,188 + 0.9
43,313 + 0.3
43,336 + -2.9
43,344 - -0.8
43,544 - -0.5
43,555 + -0.2
43,639 - 0.2
43,669 + -0.2
43,857 - -1.4
43,980 - -2.5
43,985 + -3.0
43,997 + -1.3
44,156 + 13781 mRNA_5413 0.15 -1.9
44,206 + 13781 mRNA_5413 0.17 -1.2
44,235 - 13781 mRNA_5413 0.19 -3.3
44,237 + 13781 mRNA_5413 0.19 -2.6
44,278 + 13781 mRNA_5413 0.21 -0.1
44,286 + 13781 mRNA_5413 0.21 -0.5
44,311 + 13781 mRNA_5413 0.22 -2.1
44,328 + 13781 mRNA_5413 0.23 0.6
44,449 + 13781 mRNA_5413 0.28 -0.6
44,463 - 13781 mRNA_5413 0.29 -0.5
44,563 + 13781 mRNA_5413 0.33 1.3
44,578 - 13781 mRNA_5413 0.34 -0.0
44,616 - 13781 mRNA_5413 0.36 -3.2
44,616 + 13781 mRNA_5413 0.36 -1.6
44,660 + 13781 mRNA_5413 0.38 -1.0
44,664 - 13781 mRNA_5413 0.38 -2.2
44,690 + 13781 mRNA_5413 0.39 -0.2
45,095 - 13781 mRNA_5413 0.57 -0.5
45,095 - 13781 mRNA_5413 0.57 -3.1
45,103 + 13781 mRNA_5413 0.58 -2.0
45,154 - 13781 mRNA_5413 0.60 -0.0
45,176 - 13781 mRNA_5413 0.61 -1.7
45,275 + 13781 mRNA_5413 0.65 -3.6
45,595 + 13781 mRNA_5413 0.80 -0.7
45,623 - 13781 mRNA_5413 0.81 -1.3
45,669 - 13781 mRNA_5413 0.83 -2.3
45,678 - 13781 mRNA_5413 0.84 -0.2
45,678 - 13781 mRNA_5413 0.84 -1.5
45,684 + 13781 mRNA_5413 0.84 0.2
45,706 + 13781 mRNA_5413 0.85 0.2
45,709 + 13781 mRNA_5413 0.85 -0.8
45,715 - 13781 mRNA_5413 0.85 -1.6
45,999 + -2.5
46,007 - -0.2
46,120 - 0.8
46,124 - -2.1
46,132 - -4.0
46,154 - -1.3
46,156 - -2.3
46,446 - 13782 mRNA_5414 0.17 -0.6
46,447 + 13782 mRNA_5414 0.17 -2.6
46,448 - 13782 mRNA_5414 0.17 -1.5
46,540 - 13782 mRNA_5414 0.22 -2.0
46,629 + 13782 mRNA_5414 0.27 -4.3
46,671 + 13782 mRNA_5414 0.30 0.9
46,746 - 13782 mRNA_5414 0.34 1.4
47,024 + 13782 mRNA_5414 0.50 -2.7