Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5412

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5411: 13779 - K03251 EIF3D translation initiation factor 3 subunit D, at 39180 to 41133 13779 mRNA_5412: 13780 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 41309 to 43272 13780 mRNA_5413: 13781 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 43823 to 46039 13781

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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41,201 + -0.2
41,277 - -2.2
41,284 - -2.0
41,356 - -0.4
41,364 - -0.7
41,421 + -0.4
41,483 + -0.5
41,652 - 13780 mRNA_5412 0.17 -0.6
41,753 - 13780 mRNA_5412 0.23 -1.6
41,754 - 13780 mRNA_5412 0.23 -2.3
41,935 - 13780 mRNA_5412 0.32 -2.0
42,298 - 13780 mRNA_5412 0.50 -0.3
42,354 - 13780 mRNA_5412 0.53 0.1
42,487 + 13780 mRNA_5412 0.60 -1.9
42,493 + 13780 mRNA_5412 0.60 1.2
42,683 - 13780 mRNA_5412 0.70 -2.2
42,686 - 13780 mRNA_5412 0.70 -0.8
42,743 + 13780 mRNA_5412 0.73 -0.4
42,797 - 13780 mRNA_5412 0.76 -2.2
42,812 + 13780 mRNA_5412 0.77 -0.7
42,821 - 13780 mRNA_5412 0.77 1.4
42,928 - 13780 mRNA_5412 0.82 1.4
42,929 + 13780 mRNA_5412 0.82 -0.8
43,188 + 0.9
43,313 + 0.3
43,336 + -2.9
43,344 - -0.8
43,544 - -0.5
43,555 + -0.2
43,639 - 0.2
43,669 + -0.2
43,857 - -1.4
43,980 - -2.5
43,985 + -3.0
43,997 + -1.3
44,156 + 13781 mRNA_5413 0.15 -1.9
44,206 + 13781 mRNA_5413 0.17 -1.2
44,235 - 13781 mRNA_5413 0.19 -3.3
44,237 + 13781 mRNA_5413 0.19 -2.6