Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5406

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5405: 13773 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 23970 to 26723 13773 mRNA_5406: 13774 - KOG2742 Predicted oxidoreductase, at 26869 to 28382 13774 mRNA_5407: 13775 - K15734 SDR16C5 all-trans-retinol dehydrogenase (NAD+), at 28474 to 30165 13775

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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25,991 - 13773 mRNA_5405 0.73 -1.0
26,132 + 13773 mRNA_5405 0.79 -1.4
26,186 + 13773 mRNA_5405 0.80 -0.4
26,685 - -2.1
26,817 + -2.2
26,857 + -0.4
26,985 - -2.0
26,990 - 0.4
27,099 - 13774 mRNA_5406 0.15 -0.1
27,138 - 13774 mRNA_5406 0.18 -1.9
27,140 - 13774 mRNA_5406 0.18 -3.4
27,155 + 13774 mRNA_5406 0.19 -0.8
27,155 + 13774 mRNA_5406 0.19 -0.7
27,174 - 13774 mRNA_5406 0.20 -2.8
27,213 + 13774 mRNA_5406 0.23 -1.9
27,260 + 13774 mRNA_5406 0.26 -3.5
27,263 + 13774 mRNA_5406 0.26 -2.4
27,529 + 13774 mRNA_5406 0.44 -0.9
27,545 + 13774 mRNA_5406 0.45 -1.9
27,572 + 13774 mRNA_5406 0.46 -1.3
27,590 - 13774 mRNA_5406 0.48 0.0
27,698 + 13774 mRNA_5406 0.55 -0.8
27,704 - 13774 mRNA_5406 0.55 -3.4
27,705 + 13774 mRNA_5406 0.55 -0.9
27,721 + 13774 mRNA_5406 0.56 -0.5
27,743 - 13774 mRNA_5406 0.58 -1.6
27,919 - 13774 mRNA_5406 0.69 0.1
27,920 + 13774 mRNA_5406 0.69 0.6
28,071 - 13774 mRNA_5406 0.79 -4.1
28,081 + 13774 mRNA_5406 0.80 -0.5
28,183 + 13774 mRNA_5406 0.87 -0.8
28,309 + -1.5
28,359 - 0.2
28,529 - -1.5