Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5402

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5401: 13769 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 15776 to 16734 13769 mRNA_5402: 13770 - KOG2938 Predicted inosine-uridine preferring nucleoside hydrolase, at 17110 to 18696 13770 mRNA_5403: 13771 - K00789 metK S-adenosylmethionine synthetase, at 18980 to 21610 13771

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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16,273 + 13769 mRNA_5401 0.52 -0.6
16,357 + 13769 mRNA_5401 0.61 -0.6
16,669 + -1.7
16,804 + -2.6
16,807 + -2.0
16,813 + -3.3
16,826 - -2.2
16,842 - -2.5
16,989 + 1.5
16,992 + -3.4
17,002 + 0.0
17,119 - -3.1
17,262 + -1.1
17,281 + 13770 mRNA_5402 0.11 0.1
17,325 + 13770 mRNA_5402 0.14 0.5
17,516 + 13770 mRNA_5402 0.26 1.2
17,557 + 13770 mRNA_5402 0.28 -2.8
17,728 - 13770 mRNA_5402 0.39 -4.1
17,728 - 13770 mRNA_5402 0.39 -2.2
17,752 + 13770 mRNA_5402 0.40 -0.5
17,946 + 13770 mRNA_5402 0.53 -1.3
18,318 + 13770 mRNA_5402 0.76 -3.9
18,416 + 13770 mRNA_5402 0.82 -2.5
18,602 + -0.2
18,874 - -2.5
19,029 - -4.1
19,030 - -2.2
19,032 + -3.0
19,042 - -0.8
19,044 - -1.5
19,045 - -2.1
19,046 - -1.8
19,046 - -2.1
19,047 + -1.9
19,048 - -1.7
19,057 + -1.8
19,057 + -2.0
19,058 - -0.8
19,059 - -0.2
19,060 - -1.5
19,062 + -1.5
19,066 + -0.5
19,067 + -0.2
19,068 + -1.7
19,069 - -4.1
19,072 - -0.9
19,075 + -1.2
19,079 + -2.7
19,081 + 1.6
19,084 - -1.6
19,208 - -2.6
19,209 - -0.1
19,217 + -1.8
19,230 + 0.4