Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5401

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5400: 13768 - K07786 emrY MFS transporter, DHA2 family, multidrug resistance protein, at 13151 to 15531 13768 mRNA_5401: 13769 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 15776 to 16734 13769 mRNA_5402: 13770 - KOG2938 Predicted inosine-uridine preferring nucleoside hydrolase, at 17110 to 18696 13770

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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14,790 + 13768 mRNA_5400 0.69 -3.4
14,898 + 13768 mRNA_5400 0.73 -0.8
15,102 - 13768 mRNA_5400 0.82 -2.9
15,148 + 13768 mRNA_5400 0.84 -0.9
15,278 + 13768 mRNA_5400 0.89 -2.9
15,309 + -0.3
15,403 + -1.9
15,419 + 1.0
15,456 + -1.7
15,589 + -3.9
15,592 - -1.9
15,594 - 1.0
15,598 + -1.1
15,598 + -1.0
15,604 - -1.5
15,608 + -0.2
15,611 + -0.6
15,613 - -2.3
15,616 + -2.6
15,617 - -1.6
15,622 + -0.9
15,630 + -1.7
15,642 - -0.5
15,647 - -1.7
15,676 - -0.4
15,680 + -1.6
15,714 + -0.8
15,789 + -2.0
15,834 + -1.6
16,094 + 13769 mRNA_5401 0.33 -1.9
16,273 + 13769 mRNA_5401 0.52 -0.6
16,357 + 13769 mRNA_5401 0.61 -0.6
16,669 + -1.7
16,804 + -2.6
16,807 + -2.0
16,813 + -3.3
16,826 - -2.2
16,842 - -2.5
16,989 + 1.5
16,992 + -3.4
17,002 + 0.0
17,119 - -3.1
17,262 + -1.1
17,281 + 13770 mRNA_5402 0.11 0.1
17,325 + 13770 mRNA_5402 0.14 0.5
17,516 + 13770 mRNA_5402 0.26 1.2
17,557 + 13770 mRNA_5402 0.28 -2.8
17,728 - 13770 mRNA_5402 0.39 -4.1
17,728 - 13770 mRNA_5402 0.39 -2.2