Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5398

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5397: 13765 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 6124 to 7635 13765 mRNA_5398: 13766 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 8077 to 11128 13766 mRNA_5399: 13767 - K07078 K07078 uncharacterized protein, at 11684 to 12574 13767

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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7,150 + 13765 mRNA_5397 0.68 -2.4
7,159 - 13765 mRNA_5397 0.68 -0.7
7,227 - 13765 mRNA_5397 0.73 -1.8
7,269 - 13765 mRNA_5397 0.76 0.3
7,573 + -0.9
7,590 - -1.3
7,604 + -3.7
7,715 - 0.0
7,742 - -1.7
7,748 + -0.4
7,873 + -0.4
7,877 + -1.6
7,959 + -3.0
7,964 - -3.1
7,976 + -3.4
7,978 + 0.4
7,981 - -0.2
7,993 + -2.1
7,998 + -0.3
8,003 - -1.0
8,159 + -1.3
8,169 + 0.3
8,283 + -2.9
8,392 - 13766 mRNA_5398 0.10 0.1
8,423 - 13766 mRNA_5398 0.11 -1.3
8,426 + 13766 mRNA_5398 0.11 -0.8
8,429 - 13766 mRNA_5398 0.12 -3.0
8,439 + 13766 mRNA_5398 0.12 0.1
8,712 + 13766 mRNA_5398 0.21 -1.3
8,719 + 13766 mRNA_5398 0.21 -2.1
8,861 - 13766 mRNA_5398 0.26 1.0
8,867 + 13766 mRNA_5398 0.26 -2.7
9,115 - 13766 mRNA_5398 0.34 0.9
9,191 + 13766 mRNA_5398 0.37 -2.7
9,291 + 13766 mRNA_5398 0.40 -2.4
9,319 - 13766 mRNA_5398 0.41 -1.6
9,431 + 13766 mRNA_5398 0.44 0.1
9,481 + 13766 mRNA_5398 0.46 -1.6
9,575 + 13766 mRNA_5398 0.49 -2.2
9,590 - 13766 mRNA_5398 0.50 -2.7
9,591 + 13766 mRNA_5398 0.50 -2.1
9,597 + 13766 mRNA_5398 0.50 -0.3
9,624 + 13766 mRNA_5398 0.51 -2.3
9,689 - 13766 mRNA_5398 0.53 -2.7
9,886 - 13766 mRNA_5398 0.59 -0.7
10,141 - 13766 mRNA_5398 0.68 -1.7
10,144 + 13766 mRNA_5398 0.68 -1.5
10,274 + 13766 mRNA_5398 0.72 -0.8
10,274 + 13766 mRNA_5398 0.72 -0.2
10,295 + 13766 mRNA_5398 0.73 -2.2
10,322 - 13766 mRNA_5398 0.74 -0.5
10,345 - 13766 mRNA_5398 0.74 -1.1
10,713 - 13766 mRNA_5398 0.86 -2.2
10,749 + 13766 mRNA_5398 0.88 -1.5
10,821 + 13766 mRNA_5398 0.90 -0.9
10,853 + -4.2
10,874 + -1.5
10,879 + -1.9
10,972 - -1.8
10,973 + -2.0
11,196 + -0.5
11,200 - 2.0
11,291 - -2.4
11,429 + -0.6
11,435 - -1.0
11,447 + -2.7
11,451 + -1.0
11,466 - 1.3
11,467 + -1.7
11,467 + -1.2
11,472 + -3.5
11,488 + -1.4
11,496 + -1.3
11,641 + 0.6
11,663 + -2.1
11,679 + -2.3
11,681 - 0.6
11,681 + -1.3
11,793 - 13767 mRNA_5399 0.12 1.9
11,863 - 13767 mRNA_5399 0.20 -2.8
11,937 - 13767 mRNA_5399 0.28 0.3
11,938 - 13767 mRNA_5399 0.29 0.6