Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5395

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1148 to 1997 13763 mRNA_5396: 13764 - KOG4567 GTPase-activating protein, at 2092 to 5786 13764

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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158 - -3.2
159 - -2.0
160 - 0.1
169 - 0.7
180 - -3.4
189 + -1.0
198 + 0.2
201 - -2.4
208 - -1.6
210 + 0.7
225 + 13762 mRNA_5394 0.11 -1.9
225 + 13762 mRNA_5394 0.11 0.1
244 + 13762 mRNA_5394 0.13 0.6
245 - 13762 mRNA_5394 0.13 -2.8
271 - 13762 mRNA_5394 0.16 -2.2
276 - 13762 mRNA_5394 0.16 -1.4
277 + 13762 mRNA_5394 0.16 0.1
280 - 13762 mRNA_5394 0.17 -0.5
306 + 13762 mRNA_5394 0.19 0.8
317 - 13762 mRNA_5394 0.21 -0.5
345 + 13762 mRNA_5394 0.23 -1.8
345 - 13762 mRNA_5394 0.23 -2.7
347 + 13762 mRNA_5394 0.24 -1.0
359 - 13762 mRNA_5394 0.25 -1.8
387 - 13762 mRNA_5394 0.28 -1.8
399 + 13762 mRNA_5394 0.29 0.0
434 + 13762 mRNA_5394 0.33 -0.5
447 - 13762 mRNA_5394 0.34 -2.6
485 - 13762 mRNA_5394 0.38 0.9
543 + 13762 mRNA_5394 0.44 -2.2
649 + 13762 mRNA_5394 0.55 -1.0
667 + 13762 mRNA_5394 0.57 -2.8
667 - 13762 mRNA_5394 0.57 -1.5
678 - 13762 mRNA_5394 0.58 0.0
718 + 13762 mRNA_5394 0.63 -2.9
723 + 13762 mRNA_5394 0.63 -3.2
802 + 13762 mRNA_5394 0.71 -1.4
806 + 13762 mRNA_5394 0.72 -1.6
905 - 13762 mRNA_5394 0.82 -0.8
911 + 13762 mRNA_5394 0.83 -2.1
965 + 13762 mRNA_5394 0.88 -0.7
966 + 13762 mRNA_5394 0.89 -2.0
968 + 13762 mRNA_5394 0.89 -2.3
1,014 - -3.4
1,084 - -0.6
1,103 - -2.0
1,110 + -0.6
1,245 - 13763 mRNA_5395 0.11 -0.9
1,260 - 13763 mRNA_5395 0.13 -1.2
1,376 - 13763 mRNA_5395 0.27 -3.5
1,438 + 13763 mRNA_5395 0.34 0.1
1,438 + 13763 mRNA_5395 0.34 -0.4
1,438 + 13763 mRNA_5395 0.34 -3.1
1,523 + 13763 mRNA_5395 0.44 -1.4
1,528 - 13763 mRNA_5395 0.45 -0.7
1,533 + 13763 mRNA_5395 0.45 -1.4
1,538 + 13763 mRNA_5395 0.46 0.4
1,538 - 13763 mRNA_5395 0.46 -1.2
1,556 + 13763 mRNA_5395 0.48 -0.6
1,639 + 13763 mRNA_5395 0.58 -1.1
1,854 - 13763 mRNA_5395 0.83 -1.8
1,855 - 13763 mRNA_5395 0.83 -1.2
1,887 - 13763 mRNA_5395 0.87 -2.4
1,908 - 13763 mRNA_5395 0.89 -2.7
2,000 - -1.5
2,009 + -1.5
2,093 + -0.4
2,125 - 0.2
2,156 - -0.2
2,162 + -3.3
2,397 + -3.1
2,412 + 0.4
2,570 + 13764 mRNA_5396 0.13 0.5
2,586 + 13764 mRNA_5396 0.13 -0.8
2,594 - 13764 mRNA_5396 0.14 -0.7
2,597 + 13764 mRNA_5396 0.14 -1.3
2,661 + 13764 mRNA_5396 0.15 -1.1
2,773 + 13764 mRNA_5396 0.18 -0.1
2,847 - 13764 mRNA_5396 0.20 -0.4
2,895 - 13764 mRNA_5396 0.22 -0.6
2,923 + 13764 mRNA_5396 0.22 -4.9