Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5365

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5364: 13732 - KOG1630 Growth hormone-induced protein and related proteins, at 546685 to 547952 13732 mRNA_5365: 13733 - K00107 ALO D-arabinono-1,4-lactone oxidase, at 548401 to 550040 13733 mRNA_5366: 13734 - KOG1752 Glutaredoxin and related proteins, at 550518 to 551881 13734

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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547,405 - 13732 mRNA_5364 0.57 -4.0
547,421 + 13732 mRNA_5364 0.58 -1.6
547,428 + 13732 mRNA_5364 0.59 -3.3
547,666 - 13732 mRNA_5364 0.77 -1.9
547,694 - 13732 mRNA_5364 0.80 -2.7
547,706 + 13732 mRNA_5364 0.81 -2.0
547,746 + 13732 mRNA_5364 0.84 -1.3
547,837 - -0.6
547,849 - -0.3
547,866 + -2.0
547,878 - 0.5
547,884 + -0.9
548,018 - -2.3
548,025 - -0.1
548,026 - -1.6
548,036 - -3.2
548,037 - 1.2
548,092 - -1.4
548,477 - -3.0
548,489 + -2.7
548,499 + -2.4
548,772 + 13733 mRNA_5365 0.23 -0.7
548,772 - 13733 mRNA_5365 0.23 -1.3
548,790 - 13733 mRNA_5365 0.24 -0.5
549,261 + 13733 mRNA_5365 0.52 0.3
549,316 - 13733 mRNA_5365 0.56 -0.8
549,358 + 13733 mRNA_5365 0.58 0.2
549,395 + 13733 mRNA_5365 0.61 -1.0
549,536 + 13733 mRNA_5365 0.69 -0.8
549,647 - 13733 mRNA_5365 0.76 0.3
549,675 - 13733 mRNA_5365 0.78 -1.7
549,678 + 13733 mRNA_5365 0.78 -0.8
549,963 - -0.8
549,968 + -3.0
549,970 - -1.1
550,095 + 0.0
550,101 + -2.3
550,134 + -2.5
550,370 + 0.0
550,378 - -0.8
550,389 - -1.3
550,391 - -0.7
550,835 + 13734 mRNA_5366 0.23 -1.7