Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5364

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5363: 13731 - KOG0254 Predicted transporter (major facilitator superfamily), at 544330 to 546394 13731 mRNA_5364: 13732 - KOG1630 Growth hormone-induced protein and related proteins, at 546685 to 547952 13732 mRNA_5365: 13733 - K00107 ALO D-arabinono-1,4-lactone oxidase, at 548401 to 550040 13733

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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546,375 + -1.6
546,402 + -0.7
546,652 - -2.2
546,710 + -2.6
546,860 + 13732 mRNA_5364 0.14 -2.5
546,914 + 13732 mRNA_5364 0.18 -1.2
547,123 + 13732 mRNA_5364 0.35 -1.1
547,238 - 13732 mRNA_5364 0.44 0.1
547,267 + 13732 mRNA_5364 0.46 0.9
547,267 + 13732 mRNA_5364 0.46 -0.7
547,270 - 13732 mRNA_5364 0.46 -0.7
547,405 - 13732 mRNA_5364 0.57 -4.0
547,421 + 13732 mRNA_5364 0.58 -1.6
547,428 + 13732 mRNA_5364 0.59 -3.3
547,666 - 13732 mRNA_5364 0.77 -1.9
547,694 - 13732 mRNA_5364 0.80 -2.7
547,706 + 13732 mRNA_5364 0.81 -2.0
547,746 + 13732 mRNA_5364 0.84 -1.3
547,837 - -0.6
547,849 - -0.3
547,866 + -2.0
547,878 - 0.5
547,884 + -0.9
548,018 - -2.3
548,025 - -0.1
548,026 - -1.6
548,036 - -3.2
548,037 - 1.2
548,092 - -1.4
548,477 - -3.0
548,489 + -2.7
548,499 + -2.4
548,772 + 13733 mRNA_5365 0.23 -0.7
548,772 - 13733 mRNA_5365 0.23 -1.3
548,790 - 13733 mRNA_5365 0.24 -0.5