Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5362

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5361: 13729 - K00511 SQLE, ERG1 squalene monooxygenase, at 541060 to 542859 13729 mRNA_5362: 13730 - Hypothetical Protein, at 543125 to 544034 13730 mRNA_5363: 13731 - KOG0254 Predicted transporter (major facilitator superfamily), at 544330 to 546394 13731

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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543,014 - -2.7
543,056 + 0.4
543,061 - -2.5
543,069 + 0.1
543,083 - -1.4
543,094 + -1.9
543,117 - -0.8
543,129 + -1.0
543,166 - -0.8
543,193 - 0.0
543,194 + 0.0
543,282 + 13730 mRNA_5362 0.17 -2.0
543,318 + 13730 mRNA_5362 0.21 -2.8
543,418 - 13730 mRNA_5362 0.32 -2.5
543,625 - 13730 mRNA_5362 0.55 -1.1
543,783 - 13730 mRNA_5362 0.72 -3.3
543,816 + 13730 mRNA_5362 0.76 -0.4
543,931 + 13730 mRNA_5362 0.89 -2.3
543,931 + 13730 mRNA_5362 0.89 -2.4
543,951 - 0.0
543,959 - 0.1
543,959 + -0.6
543,970 - -3.1
544,005 - -1.3
544,007 - -1.7
544,029 - -1.0
544,035 + -1.0
544,084 - -4.0
544,109 + -2.6
544,418 - 0.6
544,761 + 13731 mRNA_5363 0.21 -2.3