Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5360

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5359: 13727 - KOG0254 Predicted transporter (major facilitator superfamily), at 536738 to 538804 13727 mRNA_5360: 13728 - HMMPfam-Xylose isomerase-like TIM barrel-PF01261,SUPERFAMILY--SSF51658, at 539342 to 540520 13728 mRNA_5361: 13729 - K00511 SQLE, ERG1 squalene monooxygenase, at 541060 to 542859 13729

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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538,636 + -1.4
538,785 - 1.5
538,807 - -0.9
538,819 + -0.6
538,824 - -0.9
538,976 - -2.7
538,980 + -0.9
538,989 - 0.6
538,992 + -1.1
538,997 - -0.5
538,997 - -1.3
538,997 - -1.8
539,001 + 0.8
539,007 + 0.4
539,011 + -2.0
539,011 - -3.2
539,027 + -0.6
539,028 - -0.6
539,034 - -0.4
539,037 - -1.6
539,039 - -0.8
539,040 - -3.3
539,042 + -2.4
539,042 - 0.5
539,047 + -2.1
539,047 + -0.7
539,049 + 0.1
539,049 + -2.1
539,061 - -0.2
539,062 + -2.2
539,068 + -2.9
539,075 - -0.4
539,092 - -2.4
539,093 - -1.8
539,212 + -0.7
539,223 - -1.0
539,255 + -2.8
539,268 - 0.1
539,275 - 1.4
539,278 + -2.6
539,282 + 0.1
539,282 + 0.4
539,292 + -2.2
539,309 + -2.2
539,320 - -0.9
539,324 + 0.2
539,378 + -2.2
539,508 + 13728 mRNA_5360 0.14 0.7
539,712 + 13728 mRNA_5360 0.31 -0.6
539,829 + 13728 mRNA_5360 0.41 -1.6
539,858 + 13728 mRNA_5360 0.44 1.0
539,959 - 13728 mRNA_5360 0.52 -1.1
540,403 + -1.0
540,404 - -1.3
540,670 + 1.8
540,709 - -4.1
540,735 - -0.1
540,843 - 0.2
540,853 - -1.9
540,874 + -0.8
540,875 - 0.3
541,014 + -1.3