Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5342

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5341: 13709 - KOG0692 Pentafunctional AROM protein, at 495239 to 496655 13709 mRNA_5342: 13710 - KOG0692 Pentafunctional AROM protein, at 496893 to 498783 13710 mRNA_5343: 13711 - K01835 pgm phosphoglucomutase, at 499617 to 502031 13711

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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495,997 + 13709 mRNA_5341 0.53 -4.3
496,005 - 13709 mRNA_5341 0.54 -1.8
496,275 - 13709 mRNA_5341 0.73 -1.0
496,391 + 13709 mRNA_5341 0.81 -1.8
496,427 - 13709 mRNA_5341 0.84 -1.1
496,564 + -0.3
496,567 - -0.5
496,572 - -2.4
496,584 + -2.3
496,853 - -0.6
496,874 - 0.2
496,875 - -2.0
496,877 + 0.4
496,884 - -0.2
496,895 + -3.3
496,990 - -0.8
497,019 + 0.7
497,038 + 0.5
497,160 + 13710 mRNA_5342 0.14 2.6
497,195 - 13710 mRNA_5342 0.16 -0.9
497,309 - 13710 mRNA_5342 0.22 -1.6
497,456 - 13710 mRNA_5342 0.30 -0.8
497,601 - 13710 mRNA_5342 0.37 -1.9
497,635 - 13710 mRNA_5342 0.39 -0.8
497,646 - 13710 mRNA_5342 0.40 -2.3
497,789 + 13710 mRNA_5342 0.47 -2.6
497,808 - 13710 mRNA_5342 0.48 -1.7
497,912 + 13710 mRNA_5342 0.54 -3.0
498,264 - 13710 mRNA_5342 0.73 -2.0
498,333 - 13710 mRNA_5342 0.76 -0.1
498,349 + 13710 mRNA_5342 0.77 -0.8
498,354 + 13710 mRNA_5342 0.77 -1.7
498,683 + -2.1
498,700 - 1.5
498,926 + -1.1
498,935 - -2.4
498,953 - -1.1
498,980 + -1.6
499,540 + -0.8
499,548 - -0.0
499,556 - 0.0
499,575 - -0.9
499,710 + -0.4
499,721 + 0.5
499,723 + 0.5