Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5331

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5330: 13698 - BLAST ZYRO0C04598p [Zygosaccharomyces rouxii], at 471272 to 473464 13698 mRNA_5331: 13699 - SUPERFAMILY--SSF52047, at 473951 to 475290 13699 mRNA_5332: 13700 - K01904 4CL 4-coumarate--CoA ligase, at 475424 to 477955 13700

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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473,156 - 13698 mRNA_5330 0.86 -0.2
473,251 - -0.7
473,302 + -3.4
473,303 - -1.7
473,576 - -1.9
473,576 - -2.5
473,576 + -1.2
473,578 - -1.0
473,580 - -0.8
473,582 - -1.0
473,585 + -0.8
473,589 - 1.2
473,601 - -3.1
473,729 + 1.4
473,859 + -2.1
473,873 + -0.0
473,887 - -0.9
474,023 - -1.4
474,303 - 13699 mRNA_5331 0.26 -2.6
474,313 + 13699 mRNA_5331 0.27 -3.0
474,316 + 13699 mRNA_5331 0.27 -0.4
474,319 + 13699 mRNA_5331 0.27 -1.8
474,407 - 13699 mRNA_5331 0.34 -1.7
474,460 + 13699 mRNA_5331 0.38 -0.3
474,565 - 13699 mRNA_5331 0.46 -0.2
474,752 - 13699 mRNA_5331 0.60 1.1
474,773 + 13699 mRNA_5331 0.61 0.3
475,027 - 13699 mRNA_5331 0.80 -1.4
475,044 + 13699 mRNA_5331 0.82 -1.0
475,166 + -0.8
475,288 - -0.1
475,360 - 0.4
475,363 - -1.4
475,383 + -0.4
475,392 + -0.1
475,399 - -2.4
475,404 + -2.1
475,530 + -2.7
475,546 + -0.4
475,679 - 13700 mRNA_5332 0.10 0.3
476,090 - 13700 mRNA_5332 0.26 -1.2
476,133 + 13700 mRNA_5332 0.28 -1.7
476,134 - 13700 mRNA_5332 0.28 -0.9