Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5328

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5327: 13695 - Hypothetical Protein, at 463511 to 464845 13695 mRNA_5328: 13696 - HMMPfam-ATP adenylyltransferase-PF09830,SUPERFAMILY--SSF54197, at 465608 to 466886 13696 mRNA_5329: 13697 - K02212 MCM4, CDC54 DNA replication licensing factor MCM4, at 467035 to 469864 13697

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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464,642 - 13695 mRNA_5327 0.85 -0.5
464,673 - 13695 mRNA_5327 0.87 -3.2
464,954 - -1.8
464,956 + -3.8
464,969 + 1.4
464,977 - 1.2
465,122 + 0.1
465,125 + -0.6
465,129 - 1.4
465,132 + 0.0
465,252 + -3.6
465,267 + -2.0
465,281 - -2.1
465,292 - -0.8
465,300 - -0.8
465,408 - -1.5
465,417 + 0.1
465,418 + -2.1
465,451 - -1.7
465,584 + -3.2
465,590 + -0.6
465,607 + -2.7
465,619 + -0.9
466,016 - 13696 mRNA_5328 0.32 3.2
466,467 - 13696 mRNA_5328 0.67 -0.7
466,598 - 13696 mRNA_5328 0.77 -0.9
466,643 + 13696 mRNA_5328 0.81 -1.4
467,033 - -1.7
467,042 - -2.1
467,138 - -0.5
467,207 - -1.5
467,208 + -0.6
467,251 + -0.7
467,284 - -1.9
467,285 + 0.0
467,318 - 13697 mRNA_5329 0.10 -2.7