Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5326

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5325: 13693 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF52266, at 459771 to 461459 13693 mRNA_5326: 13694 - K00020 mmsB, HIBADH 3-hydroxyisobutyrate dehydrogenase, at 461748 to 463259 13694 mRNA_5327: 13695 - Hypothetical Protein, at 463511 to 464845 13695

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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461,425 - -2.6
461,809 + -0.9
461,834 - -1.5
461,835 + -1.3
461,961 - 13694 mRNA_5326 0.14 1.1
462,252 + 13694 mRNA_5326 0.33 -3.1
462,257 - 13694 mRNA_5326 0.34 -2.8
462,343 + 13694 mRNA_5326 0.39 -3.2
462,432 - 13694 mRNA_5326 0.45 -1.8
462,537 - 13694 mRNA_5326 0.52 -1.1
462,709 + 13694 mRNA_5326 0.64 -1.7
462,803 + 13694 mRNA_5326 0.70 -3.0
462,828 + 13694 mRNA_5326 0.71 0.7
462,853 - 13694 mRNA_5326 0.73 -1.8
462,965 - 13694 mRNA_5326 0.80 -2.8
462,999 + 13694 mRNA_5326 0.83 -1.3
463,017 + 13694 mRNA_5326 0.84 -0.3
463,094 - 13694 mRNA_5326 0.89 -3.1
463,135 + -2.1
463,292 - -2.2
463,309 - -0.3
463,336 - -0.8
463,478 + -2.1
463,501 - -1.1
463,602 + -2.5
463,627 + -1.5
463,790 + 13695 mRNA_5327 0.21 -3.3
464,013 + 13695 mRNA_5327 0.38 -1.3
464,163 - 13695 mRNA_5327 0.49 -1.8