Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5313

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5312: 13680 - K18182 COX16 cytochrome c oxidase assembly protein subunit 16, at 429063 to 429953 13680 mRNA_5313: 13681 - KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15, at 430404 to 433324 13681 mRNA_5314: 13682 - Hypothetical Protein, at 433901 to 435484 13682

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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429,874 + -1.2
429,876 + -0.6
430,139 - -0.2
430,149 - 1.0
430,150 + -2.0
430,155 - 0.1
430,157 - -0.2
430,162 + -0.1
430,165 + -0.9
430,166 + -2.8
430,167 + -1.0
430,171 - -1.4
430,176 - -0.9
430,180 + -3.4
430,207 + -1.5
430,296 + -2.0
430,298 - -0.1
430,326 + -1.0
430,550 - -1.1
430,734 + 13681 mRNA_5313 0.11 1.7
430,849 - 13681 mRNA_5313 0.15 -1.7
431,214 + 13681 mRNA_5313 0.28 -2.7
431,315 - 13681 mRNA_5313 0.31 -2.2
431,330 - 13681 mRNA_5313 0.32 -1.6
431,349 + 13681 mRNA_5313 0.32 -0.7
431,935 - 13681 mRNA_5313 0.52 -1.6
432,069 + 13681 mRNA_5313 0.57 -1.8
432,710 - 13681 mRNA_5313 0.79 0.9
432,797 + 13681 mRNA_5313 0.82 -1.0
432,818 - 13681 mRNA_5313 0.83 -2.4
433,261 + 0.1
433,266 + -1.8
433,367 + -0.2
433,507 + -0.7
433,538 + -3.5
433,664 - -1.4
433,732 + -2.3
433,799 - -1.1
433,815 - -1.3
433,988 + -3.8
434,102 - 13682 mRNA_5314 0.13 -1.8
434,108 - 13682 mRNA_5314 0.13 -0.6
434,127 + 13682 mRNA_5314 0.14 -1.5
434,129 - 13682 mRNA_5314 0.14 -1.1
434,154 + 13682 mRNA_5314 0.16 -0.9
434,232 + 13682 mRNA_5314 0.21 -0.8
434,238 + 13682 mRNA_5314 0.21 -4.4
434,245 + 13682 mRNA_5314 0.22 -2.2
434,266 - 13682 mRNA_5314 0.23 -0.1