Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5310

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5309: 13677 - KOG0628 Aromatic-L-amino-acid/L-histidine decarboxylase, at 423149 to 425154 13677 mRNA_5310: 13678 - Hypothetical Protein, at 425565 to 427309 13678 mRNA_5311: 13679 - Hypothetical Protein, at 427613 to 428578 13679

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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424,583 + 13677 mRNA_5309 0.71 -1.5
424,906 - 13677 mRNA_5309 0.88 -0.9
425,007 + -4.5
425,019 + -2.4
425,024 - -2.0
425,028 + -1.0
425,144 - 1.5
425,147 - -1.8
425,300 - -0.3
425,308 - -1.2
425,312 - -0.4
425,312 - -3.7
425,314 - -2.0
425,323 - -1.9
425,324 + 0.5
425,328 + -1.9
425,328 + -0.0
425,328 + -0.5
425,338 - -0.5
425,341 + -1.4
425,341 - -2.4
425,352 - -1.0
425,468 + 0.8
425,475 + -1.9
425,477 + -0.3
425,484 + 0.4
425,486 + -0.4
425,498 + -2.6
425,498 + -1.0
425,502 + -1.3
425,620 + -0.1
425,640 + -1.4
425,642 + 1.1
425,648 - -1.6
425,902 + 13678 mRNA_5310 0.19 -0.3
425,939 + 13678 mRNA_5310 0.21 0.4
426,061 + 13678 mRNA_5310 0.28 -1.1
426,640 + 13678 mRNA_5310 0.62 -2.6
426,642 - 13678 mRNA_5310 0.62 0.3
426,709 + 13678 mRNA_5310 0.66 0.0
427,160 + -1.9
427,240 - -2.0
427,241 + -0.0
427,261 + 0.0
427,314 - -0.3
427,323 - -3.2
427,361 - -0.8
427,364 - -1.0
427,388 - -0.3
427,472 + -1.2
427,487 - -2.4
427,513 + 2.0
427,529 - -1.8
427,548 + -3.0
427,587 - -2.0
427,604 + 0.1
427,620 - -1.2
427,628 - -0.2
427,665 - -0.9
427,667 + -3.2
427,671 + 0.0
427,710 + 13679 mRNA_5311 0.10 -2.4
427,744 + 13679 mRNA_5311 0.14 0.2
427,843 + 13679 mRNA_5311 0.24 -1.2
428,068 - 13679 mRNA_5311 0.47 -1.4
428,075 + 13679 mRNA_5311 0.48 -1.2
428,106 - 13679 mRNA_5311 0.51 -0.7
428,203 + 13679 mRNA_5311 0.61 -0.6
428,218 - 13679 mRNA_5311 0.63 -0.2
428,251 - 13679 mRNA_5311 0.66 -3.9