Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5291

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5290: 13658 - HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774, at 365926 to 369880 13658 mRNA_5291: 13659 - K00799 GST, gst glutathione S-transferase, at 370278 to 371436 13659 mRNA_5292: 13660 - Hypothetical Protein, at 372061 to 373005 13660

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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369,547 - -1.6
369,581 - -2.0
369,591 + 0.0
369,694 - -1.2
369,730 + -0.4
369,743 - -1.4
369,743 + 0.2
369,873 + -2.8
369,885 - -1.0
369,900 + -0.2
369,902 - -0.5
370,012 - -0.1
370,020 - -0.5
370,020 - -2.3
370,021 - 0.4
370,033 + 1.1
370,036 + -0.8
370,039 - 0.2
370,039 - -0.4
370,043 + -1.9
370,070 - -0.7
370,091 - -0.2
370,095 + -0.5
370,097 + -0.1
370,202 + -2.8
370,489 - 13659 mRNA_5291 0.18 -0.9
370,521 + 13659 mRNA_5291 0.21 -1.0
370,738 - 13659 mRNA_5291 0.40 -1.5
370,786 - 13659 mRNA_5291 0.44 -0.7
370,923 - 13659 mRNA_5291 0.56 -0.2
370,930 - 13659 mRNA_5291 0.56 -2.5
371,347 + -2.3
371,368 + -1.7
371,380 - -2.1
371,442 + -0.2
371,517 - 0.3
371,636 - -3.6
371,638 - -2.3
371,642 - 0.4
371,643 + -2.8
371,646 + -0.8
371,668 + -0.8
371,670 - -0.5
371,672 + -0.1
371,727 - -0.4
371,728 - -2.6
371,729 + -2.4
371,735 - -0.3
371,736 + -3.4
371,736 + -2.0
371,745 + -1.6
371,746 + -0.0
371,748 - 0.1
371,751 + -1.6
371,751 + 0.3
371,756 + -0.5
371,757 - -0.1
371,782 - -0.4
371,783 - -0.1
371,806 + -1.7
371,895 - 0.0
371,904 - -0.5
371,984 - 1.0
371,990 + -2.4
372,000 + -0.2
372,005 + -2.9
372,008 - 0.3
372,014 + -0.4
372,051 + -2.0
372,067 + -2.0
372,068 - -1.1
372,109 - -0.4
372,125 - 0.6
372,155 + -0.0
372,290 + 13660 mRNA_5292 0.24 -3.1
372,409 - 13660 mRNA_5292 0.37 0.6
372,435 + 13660 mRNA_5292 0.40 -0.3