Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5289

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5288: 13656 - HMMPfam-Complex I intermediate-associated protein 30 (CIA30)-PF08547,SUPERFAMILY--SSF49785, at 362943 to 363833 13656 mRNA_5289: 13657 - K00344 qor, CRYZ NADPH2-quinone reductase, at 363937 to 365504 13657 mRNA_5290: 13658 - HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774, at 365926 to 369880 13658

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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362,962 + -0.4
363,068 - 13656 mRNA_5288 0.14 -0.2
363,113 + 13656 mRNA_5288 0.19 0.1
363,197 - 13656 mRNA_5288 0.29 0.4
363,574 + 13656 mRNA_5288 0.71 -1.0
363,655 + 13656 mRNA_5288 0.80 0.3
363,716 - 13656 mRNA_5288 0.87 -4.2
363,766 + 1.0
364,061 - -1.3
364,259 + 13657 mRNA_5289 0.21 0.2
364,403 + 13657 mRNA_5289 0.30 -3.0
364,518 + 13657 mRNA_5289 0.37 -1.5
364,645 - 13657 mRNA_5289 0.45 -0.1
364,860 + 13657 mRNA_5289 0.59 -0.5
364,965 - 13657 mRNA_5289 0.66 -0.5
365,130 + 13657 mRNA_5289 0.76 -2.4
365,141 - 13657 mRNA_5289 0.77 -0.1
365,286 - 13657 mRNA_5289 0.86 -0.9
365,368 - -3.2
365,385 + -1.4
365,404 - -1.7
365,474 - -3.1
365,710 - -0.3
365,714 + -2.1
365,733 + -3.9
365,865 + -0.2
365,890 - -2.5
365,936 - -3.0
365,976 + -1.0
366,004 + -1.8
366,146 - -1.4
366,151 + -0.8
366,159 - -0.7
366,168 + 0.7
366,172 + -1.3
366,351 + 13658 mRNA_5290 0.11 -2.5