Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5280

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344945 to 347664 13647 mRNA_5280: 13648 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 348551 to 349893 13648 mRNA_5281: 13649 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 350665 to 352490 13649

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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347,729 - 1.3
347,796 + 0.4
347,882 + -1.9
347,904 + -2.0
348,210 - -0.7
348,212 - 0.6
348,312 - -1.1
348,347 + -3.6
348,360 + -0.9
348,384 - -1.4
348,762 + 13648 mRNA_5280 0.16 -0.9
348,798 - 13648 mRNA_5280 0.18 -2.4
349,032 - 13648 mRNA_5280 0.36 -2.4
349,050 + 13648 mRNA_5280 0.37 -0.3
349,356 + 13648 mRNA_5280 0.60 -0.7
349,657 + 13648 mRNA_5280 0.82 -0.8
349,764 + -1.2
349,799 - -2.2
349,802 - -1.3
349,802 + -2.3
349,864 + -3.5
350,002 + -2.3
350,007 + -1.2
350,079 - -0.9
350,110 + -1.9
350,118 + -0.8
350,173 - -2.9
350,177 + -1.0
350,264 - -0.8
350,269 + -2.0
350,269 - -0.2
350,275 - -1.7
350,278 + -3.0
350,283 + -0.9
350,290 - -1.6
350,302 + -2.6
350,430 - 1.5
350,474 + -2.4
350,565 - -1.5
350,647 + 0.3
350,650 - -0.9
350,651 + -2.3