Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5279

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5278: 13646 - KOG1488 Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily), at 341492 to 344533 13646 mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344945 to 347664 13647 mRNA_5280: 13648 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 348551 to 349893 13648

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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344,625 - -4.6
345,398 + 13647 mRNA_5279 0.17 -4.5
345,402 + 13647 mRNA_5279 0.17 -0.8
345,512 + 13647 mRNA_5279 0.21 1.0
345,521 - 13647 mRNA_5279 0.21 -1.3
345,549 - 13647 mRNA_5279 0.22 0.3
345,811 - 13647 mRNA_5279 0.32 -1.7
346,032 + 13647 mRNA_5279 0.40 -0.9
346,412 - 13647 mRNA_5279 0.54 -1.4
346,675 - 13647 mRNA_5279 0.64 -1.7
346,834 - 13647 mRNA_5279 0.69 -3.0
347,049 + 13647 mRNA_5279 0.77 -0.8
347,059 + 13647 mRNA_5279 0.78 -2.3
347,136 - 13647 mRNA_5279 0.81 -1.3
347,187 + 13647 mRNA_5279 0.82 -1.3
347,241 - 13647 mRNA_5279 0.84 -1.4
347,274 - 13647 mRNA_5279 0.86 -1.2
347,333 - 13647 mRNA_5279 0.88 -0.7
347,470 - 1.4
347,729 - 1.3
347,796 + 0.4
347,882 + -1.9
347,904 + -2.0
348,210 - -0.7
348,212 - 0.6
348,312 - -1.1
348,347 + -3.6
348,360 + -0.9
348,384 - -1.4