Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5273

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5272: 13640 - K02731 PSMA7 20S proteasome subunit alpha 4, at 330546 to 332091 13640 mRNA_5273: 13641 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 332530 to 334206 13641 mRNA_5274: 13642 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 334553 to 337184 13642

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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332,275 - -0.9
332,380 - -1.0
332,534 - 0.8
332,644 + -2.5
332,644 - -1.9
332,679 - -0.5
332,740 + 13641 mRNA_5273 0.13 -2.7
332,749 + 13641 mRNA_5273 0.13 -1.4
332,849 + 13641 mRNA_5273 0.19 0.9
333,070 + 13641 mRNA_5273 0.32 -2.2
333,393 - 13641 mRNA_5273 0.51 1.1
333,494 - 13641 mRNA_5273 0.57 -5.1
333,675 - 13641 mRNA_5273 0.68 -2.8
333,689 + 13641 mRNA_5273 0.69 -1.5
334,097 - -0.3
334,292 - -2.2
334,311 - 0.6
334,345 + -0.8
334,383 - -0.4
334,385 + 0.5
334,432 + -2.2
334,574 - -1.1
334,584 + -0.6
334,590 - -3.6
334,732 - 0.8
334,994 - 13642 mRNA_5274 0.17 -0.3