Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5264

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5263: 13631 - BLAST pyruvate dehydrogenase E1 component subunit alpha [Mi..., at 309267 to 309581 13631 mRNA_5264: 13632 - Hypothetical Protein, at 310145 to 311167 13632 mRNA_5265: 13633 - K18749 LSM14, RAP55, SCD6 protein LSM14, at 311622 to 313606 13633

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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309,159 - 0.2
309,174 - -2.6
309,201 + 1.3
309,298 - -0.5
309,311 - 13631 mRNA_5263 0.14 0.4
309,440 - 13631 mRNA_5263 0.55 -0.6
309,452 + 13631 mRNA_5263 0.59 -0.3
309,462 - 13631 mRNA_5263 0.62 -2.0
309,768 + -2.0
309,782 + -2.6
309,784 - 0.1
309,855 + -1.1
309,855 - 0.2
309,875 + -2.9
309,881 - -3.1
309,885 - -2.7
309,909 + -1.4
309,920 - -2.5
309,923 - -0.6
309,935 - -1.6
309,948 + -2.1
310,064 - -4.5
310,065 - -2.0
310,072 - -0.1
310,078 + -1.8
310,090 - -2.2
310,218 - -2.6
310,360 - 13632 mRNA_5264 0.21 0.3
310,392 + 13632 mRNA_5264 0.24 -3.1
310,393 - 13632 mRNA_5264 0.24 -0.8
310,652 - 13632 mRNA_5264 0.50 -1.5
310,979 + 13632 mRNA_5264 0.82 -2.6
311,506 - -1.9
311,523 + -3.5
311,542 - 0.4
311,544 + -1.1
311,680 + -1.2
311,684 - 0.1
311,695 + -1.5
311,819 - -0.0
311,820 - 0.6
311,846 + 13633 mRNA_5265 0.11 -1.0
311,855 + 13633 mRNA_5265 0.12 -2.2
312,021 + 13633 mRNA_5265 0.20 0.6